Browse Element(s) Details


Os.2081.1.S1_at

Description gb:AK109883.1
DB_XREF= gi:32995092
TID=Os.2081.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0025P13.17 (OSJNBa0025P13.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D07, full insert sequence.
FL= gb:AK109883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1926011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19210OsAffx.13631.4.S1_s_at11/111+10861038..10864112retrotransposon protein, putative, unclassified
LOC_Os01g19210Os.47130.4.A1_x_at1/111+10861038..10864112retrotransposon protein, putative, unclassified
LOC_Os01g19220Os.2075.1.S1_at11/111+10868248..10871040Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os01g19230NANA1+10872519..10873122hypothetical protein
LOC_Os01g19240OsAffx.23303.1.S1_at11/111+10874413..10878471Integral membrane protein DUF6 containing protein
LOC_Os01g19250NANA1+10882669..10882983hypothetical protein
LOC_Os01g19260Os.2081.1.S1_at11/111+10888588..10890585ATPase, AAA family protein, expressed
LOC_Os01g19270OsAffx.11108.1.S1_at11/111+10892380..10894223hypothetical protein
LOC_Os01g19280OsAffx.11109.1.S1_at11/111+10895866..10897128hypothetical protein
LOC_Os01g19290Os.31893.1.S1_at11/111+10908075..10911416integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2081.1.S1_at--726--4457Chr08:14784754..14784781 (24 bp)
GCCTCGAGATCGTGATCGACGAGCT
NONE
Os.2081.1.S1_at--439--911Chr01:10890254..10890278 (25 bp)
AGGCGGCAGAAATGGATCGTGACAA
LOC_Os01g19260
Os.2081.1.S1_at--469--9411Chr01:10890270..10890294 (25 bp)
TCGTGACAACACTCGGGAAGAACAA
LOC_Os01g19260
Os.2081.1.S1_at--229--8111Chr01:10890297..10890321 (25 bp)
TGGACGAAAGTCTCCCAAAATTTGA
LOC_Os01g19260
Os.2081.1.S1_at--622--6051Chr01:10890330..10890354 (25 bp)
GAGATTTGCAAATCGTCTTTACGGA
LOC_Os01g19260
Os.2081.1.S1_at--955--9291Chr01:10890342..10890366 (25 bp)
TCGTCTTTACGGATTTGCTAGGTTC
LOC_Os01g19260
Os.2081.1.S1_at--885--10251Chr01:10890355..10890379 (25 bp)
TTTGCTAGGTTCTGCGATGGACACG
LOC_Os01g19260
Os.2081.1.S1_at--1046--6231Chr01:10890370..10890394 (25 bp)
GATGGACACGCAAACGAGTATTTAC
LOC_Os01g19260
Os.2081.1.S1_at--946--3431Chr01:10890399..10890423 (25 bp)
CAGTCTCATATTTGAACACAACGGG
LOC_Os01g19260
Os.2081.1.S1_at--5--9031Chr01:10890446..10890470 (25 bp)
TGCAAAGGAGTTTCCTCACACTCGT
LOC_Os01g19260
Os.2081.1.S1_at--720--10291Chr01:10890456..10890480 (25 bp)
TTTCCTCACACTCGTACTTAGAGCA
LOC_Os01g19260
Target Sequence 
GCCTCGAGATCGTGATCGACGAGCTGAAGCAGACGGCAGAGGCGAATGCGAAGGCGAAGGCTGAGGCAGAGGCGAAGGCG
AAGGCCGAGGCAGAGGAAGAAGCGAAGGCGGCAGAAATGGATCGTGACAACACTCGGGAAGAACAAAATGGACGAAAGTC
TCCCAAAATTTGAAGATACTGGAGATTTGCAAATCGTCTTTACGGATTTGCTAGGTTCTGCGATGGACACGCAAACGAGT
ATTTACTGTTCAGTCTCATATTTGAACACAACGGGACAAAAATTGCTGTGGAACAATTGCAAAGGAGTTTCCTCACACTC
GTACTTAGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis