Browse Element(s) Details


Os.2075.1.S1_at

Description gb:AK105791.1
DB_XREF= gi:32991000
TID=Os.2075.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-xylosidase (OSJNBa0025P13.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H06, full insert sequence.
FL= gb:AK105791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1922011/11Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19190NANA1+10850579..10856203retrotransposon protein, putative, unclassified
LOC_Os01g19200Os.28943.1.S1_x_at4/111+10856826..10860099retrotransposon protein, putative, unclassified
LOC_Os01g19210OsAffx.13631.4.S1_s_at11/111+10861038..10864112retrotransposon protein, putative, unclassified
LOC_Os01g19210Os.47130.4.A1_x_at1/111+10861038..10864112retrotransposon protein, putative, unclassified
LOC_Os01g19220Os.2075.1.S1_at11/111+10868248..10871040Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os01g19230NANA1+10872519..10873122hypothetical protein
LOC_Os01g19240OsAffx.23303.1.S1_at11/111+10874413..10878471Integral membrane protein DUF6 containing protein
LOC_Os01g19250NANA1+10882669..10882983hypothetical protein
LOC_Os01g19260Os.2081.1.S1_at11/111+10888588..10890585ATPase, AAA family protein, expressed
LOC_Os01g19270OsAffx.11108.1.S1_at11/111+10892380..10894223hypothetical protein
LOC_Os01g19280OsAffx.11109.1.S1_at11/111+10895866..10897128hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2075.1.S1_at--927--1911Chr01:10870442..10870466 (25 bp)
ACGTGGCCAGCCACGCGTGCCAGGA
LOC_Os01g19220
Os.2075.1.S1_at--58--1911Chr01:10870520..10870544 (25 bp)
ACGTCGTGCCGATGTACACGGCGCC
LOC_Os01g19220
Os.2075.1.S1_at--181--8711Chr01:10870739..10870763 (25 bp)
TGTCCTTCCCTGTTCAGATCGACCT
LOC_Os01g19220
Os.2075.1.S1_at--943--8251Chr01:10870770..10870794 (25 bp)
GGCAGCATAGCAGCATAGGTTCTCT
LOC_Os01g19220
Os.2075.1.S1_at--98--8551Chr01:10870803..10870827 (25 bp)
TGGAGTTCGTTGGATTCTTTTGCTG
LOC_Os01g19220
Os.2075.1.S1_at--546--7011Chr01:10870863..10870887 (25 bp)
GTAATTAGTTTACACCACGCTATAG
LOC_Os01g19220
Os.2075.1.S1_at--941--9851Chr01:10870873..10870897 (25 bp)
TACACCACGCTATAGATGAAACTTT
LOC_Os01g19220
Os.2075.1.S1_at--33--2351Chr01:10870901..10870925 (25 bp)
AAAGCACATTGCATCATTGGGAATT
LOC_Os01g19220
Os.2075.1.S1_at--618--1211Chr01:10870951..10870975 (25 bp)
AGTTTTGCTCAATGTATTACTGTGA
LOC_Os01g19220
Os.2075.1.S1_at--1063--1951Chr01:10870969..10870993 (25 bp)
ACTGTGATGGCATGTTATTCAGCAA
LOC_Os01g19220
Os.2075.1.S1_at--751--791Chr01:10871016..10871040 (25 bp)
ATGGAAATCAATCATTAGCAGTGTT
LOC_Os01g19220
Target Sequence 
ACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGCCAACACGGGCGGCAGGGACGGCACCCAC
GTCGTGCCGATGTACACGGCGCCGCCGGCGGAGGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCG
GGTNGNCCNCGGGCGCCNCCGTCGAGGNTGNCNTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGC
GTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCTGTCGCTGTCCTTCCCTGTTCAGATCG
ACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAG
GTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTG
GGAATTAATTGGAACAGGAATTTTNATTTTTAGTTTTGCTCAATGTATTACTGTGATGGCATGTTATTCAGCAATGTTAC
ACTTTTTTTTTCAATAATGGAAATCAATCATTAGCAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis