Browse Element(s) Details


Os.32101.2.S1_at

Description gb:NM_185925.1
DB_XREF= gi:34898935
GEN=OJ1316_A04.21
TID=Os.32101.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32101 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative brassinolide responsible protein (OJ1316_A04.21), mRNA.
PROD=putative brassinolide responsible protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4539011/11hypothetical protein
LOC_Os07g454102/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein
LOC_Os07g45390Os.32101.2.S1_at11/117+27062213..27065707hypothetical protein
LOC_Os07g45400Os.36973.1.S1_at11/117+27068287..27081782expressed protein
LOC_Os07g45410OsAffx.22542.1.S1_at11/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410Os.32101.2.S1_at2/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45410OsAffx.20275.1.S1_at1/117+27083145..27092523retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32101.2.S1_at--223--8171Chr07:27064701..27064725 (25 bp)
GGAACCTGGGCATAGATTCTTTAAG
LOC_Os07g45390
Os.32101.2.S1_at--579--631Chr07:27064738..27064762 (25 bp)
ATGCTAGTGCATGACAACAGGTACA
LOC_Os07g45390
Os.32101.2.S1_at--556--2371Chr07:27064788..27064812 (25 bp)
AAACCTGTGCAAACACTCTAGAGTT
LOC_Os07g45390
Os.32101.2.S1_at--259--7731Chr07:27064833..27064857 (25 bp)
GGTGGAACTTTCCAGTGTCCTACTA
LOC_Os07g45390
Os.32101.2.S1_at--318--2752Chr07:27092129..27092153 (25 bp)
AAGAACTCGAGGTCCTTGTTGGCCT
LOC_Os07g45410
Os.32101.2.S1_at--678--6614Chr07:27092146..27092170 (25 bp)
GTTGGCCTCAGTTCACAAATATGCA
LOC_Os07g45410
Os.32101.2.S1_at--322--9051Chr07:27065342..27065366 (25 bp)
TGCAGGGTTAGTCCTAAAAGCTTTT
LOC_Os07g45390
Os.32101.2.S1_at--769--2591Chr07:27065442..27065466 (25 bp)
AACCCAATCCACAGTTTCCAGGAAT
LOC_Os07g45390
Os.32101.2.S1_at--189--8091Chr07:27065503..27065527 (25 bp)
GGAGCTGAGCTCTCGTTATGCAACA
LOC_Os07g45390
Os.32101.2.S1_at--57--10391Chr07:27065604..27065628 (25 bp)
TTTTCTTGGGCAACACAGGGCTCAT
LOC_Os07g45390
Os.32101.2.S1_at--1031--5111Chr07:27065632..27065656 (25 bp)
GCACAGAGTGAATCTGTCCTCTCTT
LOC_Os07g45390
Target Sequence 
GGAACCTGGGCATAGATTCTTTAAGGATGTGGCAAGAATGCTAGTGCATGACAACAGGTACATACATGTTGCAGCAAATG
TACTGCAAAACCTGTGCAAACACTCTAGAGTTGAGCTAGGAGATTCAGTTTTGGTGGAACTTTCCAGTGTCCTACTAGAG
GTGTTGGGACAAGTAATGGATGCAGAGGGAAAAGAACTCGAGGTCCTTGTTGGCCTCAGTTCACAAATATGCAGGGTTAG
TCCTAAAAGCTTTTCAAAAGCGCTAGAACAGGGTCAGAAGGAGGCAAGATTCGTGGAGAAGCTAATCAATGGACTAAATG
CGAATATGAAACCCAATCCACAGTTTCCAGGAATCAGAAGTGTGATAGTTGAGCAGTGTATATACATGATGGAGCTGAGC
TCTCGTTATGCAACATATTTCAGAAATCATGAATTGATGGAAGCATTAATAAGGGTGGAGAAGACACCATCAAGGGCTGA
AAAATACAGGCTTTTCTTGGGCAACACAGGGCTCATTGAGCACAGAGTGAATCTGTCCTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32101.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis