Browse Element(s) Details

Os.32187.1.S1_at

Description

gb:AK105653.1
DB_XREF= gi:32990862
TID=Os.32187.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Chlorella vulgaris C-27 chloroplast DNA, cell division inhibitor MinD. (AB001684) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-G04, full insert sequence.
FL= gb:AK059897.1 gb:AK105653.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01690	11/11	Septum site-determining protein minD, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01650	Os.22256.2.S1_x_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.1.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.2.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.1.S1_at	3/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_x_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01660	Os.44872.1.S1_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01660	Os.44872.2.S1_x_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01670	Os.23936.1.S1_at	11/11	6	+	397679..402494	myb family transcription factor, putative, expressed
LOC_Os06g01680	Os.9729.3.S1_a_at	11/11	6	+	402739..409270	expressed protein
LOC_Os06g01690	Os.32187.1.S1_at	11/11	6	+	409926..412035	Septum site-determining protein minD, putative, expressed
LOC_Os06g01700	Os.19955.1.S1_at	11/11	6	+	412319..415043	Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01700	Os.19955.1.S2_at	11/11	6	+	412319..415043	Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01710	OsAffx.10379.1.A1_at	10/11	6	+	415531..419161	expressed protein
LOC_Os06g01720	Os.50408.1.S1_at	11/11	6	+	419781..424168	expressed protein
LOC_Os06g01730	OsAffx.29607.2.S1_s_at	11/11	6	+	425064..429602	hypothetical protein
LOC_Os06g01740	NA	NA	6	+	429838..433798	hypothetical protein
LOC_Os06g01750	OsAffx.14351.1.S1_x_at	2/11	6	+	436156..437133	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0010020	biological_process	chloroplast fission
GO:0009507	cellular_component	chloroplast
GO:0005515	molecular_function	protein binding
GO:0016887	molecular_function	ATPase activity
GO:0030899	molecular_function	calcium-dependent ATPase activity
GO:0042803	molecular_function	protein homodimerization activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.32187.1.S1_at--752--143	1	Chr06:411438..411462 (25 bp)	AGAAGAGGCCGTGCTTGTTACTACC	LOC_Os06g01690
Os.32187.1.S1_at--572--1053	1	Chr06:411452..411476 (25 bp)	TTGTTACTACCCCTGACATTACGGC	LOC_Os06g01690
Os.32187.1.S1_at--1121--207	1	Chr06:411467..411491 (25 bp)	ACATTACGGCTCTCCGTGATGCTGA	LOC_Os06g01690
Os.32187.1.S1_at--189--1041	1	Chr06:411539..411563 (25 bp)	TTATTGTCAACCGAGTACGCCCAGA	LOC_Os06g01690
Os.32187.1.S1_at--35--143	1	Chr06:411606..411630 (25 bp)	AGAAATGCTTGGCTTGCCTTTGCTA	LOC_Os06g01690
Os.32187.1.S1_at--515--445	1	Chr06:411621..411645 (25 bp)	GCCTTTGCTAGGTGTTGTGCCAGAG	LOC_Os06g01690
Os.32187.1.S1_at--707--1003	1	Chr06:411672..411696 (25 bp)	TAGAGGTGTGCCGTTGGTTCTGAAC	LOC_Os06g01690
Os.32187.1.S1_at--542--703	1	Chr06:411875..411899 (25 bp)	GTACAGATTTGCGTTTTGGAGCTAC	LOC_Os06g01690
Os.32187.1.S1_at--111--589	1	Chr06:411893..411917 (25 bp)	GAGCTACGATTGTTTTTCCCATTTC	LOC_Os06g01690
Os.32187.1.S1_at--251--1003	1	Chr06:411936..411960 (25 bp)	TAGAATGATTCATCCGTTGTGCTTA	LOC_Os06g01690
Os.32187.1.S1_at--754--573	1	Chr06:411969..411993 (25 bp)	GACTGGAGTATTTTGCCTTGTTTGC	LOC_Os06g01690

Target Sequence

AGAAGAGGCCGTGCTTGTTACTACCCCTGACATTACGGCTCTCCGTGATGCTGACCGTGTTGCAGGGCTATTGGAGTGTG
ACGGCATCAAAGACATTAAGATTATTGTCAACCGAGTACGCCCAGACCTGGTGAAGGGAGAGGATATGATGTCAGCACTT
GATGTTCAAGAAATGCTTGGCTTGCCTTTGCTAGGTGTTGTGCCAGAGGACGCGGAGGTGATCCGGAGTACAAATAGAGG
TGTGCCGTTGGTTCTGAACGACCCACCCACACCAGCTGGTCTTGCTCTGGAGCAGGCGACTTGGCGGTTGGTGGAAAGAG
ATGCAATGACAGCAGTTATGGTAGAGGAGCAGGAGAGGCCCAAGAAGAAAGCTGGGTTCTTTTCATTCTTTGGTGGGTAA
TTTGCTGTGAGATTAATGAGCTCAGTGTAGGCAGTGTGTACAGATTTGCGTTTTGGAGCTACGATTGTTTTTCCCATTTC
TTTTGCTTTGTTATAGTGTAGAATGATTCATCCGTTGTGCTTAAATCCATAGACTGGAGTATTTTGCCTTGTTTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis