Browse Element(s) Details


Os.44872.1.S1_at

Description gb:AK111956.1
DB_XREF= gi:37988619
TID=Os.44872.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 6, membrane protein homolog. (Z97341) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-G05, full insert sequence.
FL= gb:AK111956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0166011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01630Os.22911.1.S1_a_at11/116+369096..373968pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os06g01640Os.49738.1.S1_at11/116+374706..381665Protein arginine N-methyltransferase, putative, expressed
LOC_Os06g01650Os.22256.2.S1_x_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.22256.1.S1_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.22256.2.S1_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.1.S1_at3/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.2.S1_x_at2/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.2.S1_at2/116+386223..392012expressed protein
LOC_Os06g01660Os.44872.1.S1_at11/116+393580..396914Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01660Os.44872.2.S1_x_at11/116+393580..396914Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01670Os.23936.1.S1_at11/116+397679..402494myb family transcription factor, putative, expressed
LOC_Os06g01680Os.9729.3.S1_a_at11/116+402739..409270expressed protein
LOC_Os06g01690Os.32187.1.S1_at11/116+409926..412035Septum site-determining protein minD, putative, expressed
LOC_Os06g01700Os.19955.1.S1_at11/116+412319..415043Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01700Os.19955.1.S2_at11/116+412319..415043Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01710OsAffx.10379.1.A1_at10/116+415531..419161expressed protein
LOC_Os06g01720Os.50408.1.S1_at11/116+419781..424168expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44872.1.S1_at--417--4671Chr06:394436..394460 (25 bp)
GCGTGGTGTTTCAGACATGGTGCAT
LOC_Os06g01660
Os.44872.1.S1_at--803--2331Chr06:394406..394430 (25 bp)
AAAGAGGACCTCTGCTCGTCTCTAT
LOC_Os06g01660
Os.44872.1.S1_at--153--7171Chr06:394389..394413 (25 bp)
GTCTCTATCTTTGGCCCTGTGCAGA
LOC_Os06g01660
Os.44872.1.S1_at--1103--10231Chr06:394380..394404 (25 bp)
TTTGGCCCTGTGCAGACCGTCTGTT
LOC_Os06g01660
Os.44872.1.S1_at--836--3751Chr06:393928..394344 (25 bp)
CTCTGCCTCGGAAGCTTGGCAGGGA
LOC_Os06g01660
Os.44872.1.S1_at--1079--7311Chr06:393901..393925 (25 bp)
GTGCTCATGTTCTGTGGGCTCTACA
LOC_Os06g01660
Os.44872.1.S1_at--1000--5951Chr06:393814..393838 (25 bp)
GAGAAGGCTCTTTTATCCTAATTAA
LOC_Os06g01660
Os.44872.1.S1_at--114--9551Chr06:393777..393801 (25 bp)
TCTTTTTCTCTTGTAATTCTTGTAA
LOC_Os06g01660
Os.44872.1.S1_at--1042--3671Chr06:393698..393722 (25 bp)
CTTTCTCTAGGTGTATCTGTGTCTA
LOC_Os06g01660
Os.44872.1.S1_at--477--6951Chr06:393651..393675 (25 bp)
GTAGCAAACGTCAGCACATACTTTT
LOC_Os06g01660
Os.44872.1.S1_at--70--9871Chr06:393606..393630 (25 bp)
TACACTACAGTACCCCTACATGAGG
LOC_Os06g01660
Target Sequence 
GCGTGGTGTTTCAGACATGGTGCATCGGGAAAAGAGGACCTCTGCTCGTCTCTATCTTTGGCCCTGTGCAGACCGTCTGT
TCTGCCCTCCTCTCTGCTCTTCTCTTCTCCCAGTTGCTCTGCCTCGGAAGCTTGGCAGGGATGGTGCTCATGTTCTGTGG
GCTCTACATCGTCTTGTGGGCGAAGAGCAAGGAAGGTCATAGTATTATTCATTTGGAAGGTGGCGATGTTGAGAAGGCTC
TTTTATCCTAATTAACAACCCACCTTTTCTTTTTCTCTTGTAATTCTTGTAAGTATGTACGTATTAGATGTAATTGCAAA
ATAGTAGCAGTAGCTCTTTTTTTTTTCTTTCTCTAGGTGTATCTGTGTCTAGTACAAAAGGTAGTATTTGTTTGTAGCAA
ACGTCAGCACATACTTTTGAGTGCGGAAGAAGATAGAGTACACTACAGTACCCCTACATGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis