Browse Element(s) Details

Os.22256.1.S1_at

Description

gb:AK106556.1
DB_XREF= gi:32991765
TID=Os.22256.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST AU031036(E60617) corresponds to a region of the predicted gene.~Similar to Human mRNA for KIAA0310 gene. (AB002308) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H03, full insert sequence.
FL= gb:AK106556.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01650	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01620	Os.31716.2.A1_at	9/11	6	+	364316..366066	GRAS family transcription factor containing protein, expressed
LOC_Os06g01630	Os.22911.1.S1_a_at	11/11	6	+	369096..373968	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os06g01640	Os.49738.1.S1_at	11/11	6	+	374706..381665	Protein arginine N-methyltransferase, putative, expressed
LOC_Os06g01650	Os.22256.2.S1_x_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.1.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.2.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.1.S1_at	3/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_x_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01660	Os.44872.1.S1_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01660	Os.44872.2.S1_x_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01670	Os.23936.1.S1_at	11/11	6	+	397679..402494	myb family transcription factor, putative, expressed
LOC_Os06g01680	Os.9729.3.S1_a_at	11/11	6	+	402739..409270	expressed protein
LOC_Os06g01690	Os.32187.1.S1_at	11/11	6	+	409926..412035	Septum site-determining protein minD, putative, expressed
LOC_Os06g01700	Os.19955.1.S1_at	11/11	6	+	412319..415043	Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01700	Os.19955.1.S2_at	11/11	6	+	412319..415043	Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01710	OsAffx.10379.1.A1_at	10/11	6	+	415531..419161	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.22256.1.S1_at--804--961	1	Chr06:386796..386820 (25 bp)	TCATGACCCCATCTGGCAGTGGGAA	LOC_Os06g01650
Os.22256.1.S1_at--622--469	1	Chr06:386709..386733 (25 bp)	GCGGCAATGCTGTTTCGAGATCACC	LOC_Os06g01650
Os.22256.1.S1_at--984--809	1	Chr06:386673..386697 (25 bp)	GGACCATGATGCAGTCTCCGTTGAT	LOC_Os06g01650
Os.22256.1.S1_at--375--717	1	Chr06:386660..386684 (25 bp)	GTCTCCGTTGATTCCTGGACAGAAA	LOC_Os06g01650
Os.22256.1.S1_at--417--215	1	Chr06:386628..386652 (25 bp)	ACAGCCGTTCCAGTAGTAACTCATC	LOC_Os06g01650
Os.22256.1.S1_at--721--1047	1	Chr06:386601..386625 (25 bp)	TTCAATTCAACAATGGCCTGGGCGA	LOC_Os06g01650
Os.22256.1.S1_at--355--615	1	Chr06:386527..386551 (25 bp)	GAGGTGCGTCCATCGTGTAAATCAA	LOC_Os06g01650
Os.22256.1.S1_at--584--61	1	Chr06:386384..386408 (25 bp)	ATGCGGATGCCGTTGTACAGATAGA	LOC_Os06g01650
Os.22256.1.S1_at--697--333	1	Chr06:386358..386382 (25 bp)	CACTGCCAGTTGATTTGAGATGCCA	LOC_Os06g01650
Os.22256.1.S1_at--100--741	1	Chr06:386308..386332 (25 bp)	GTGATTACTTTGCTACTTTCTTTTA	LOC_Os06g01650
Os.22256.1.S1_at--1104--1043	1	Chr06:386286..386310 (25 bp)	TTACCCCTTTAGAGCATTTGTTCAT	LOC_Os06g01650

Target Sequence

TCATGACCCCATCTGGCAGTGGGAATGGCAGCTCATTCTCAAGGTCACGAGCAGCATCATGGAGTGGAGCATATTCAGAG
CAGTTGAGCGGCAATGCTGTTTCGAGATCACCAGATGGACAACGGACCATGATGCAGTCTCCGTTGATTCCTGGACAGAA
ACAATCCCACAGCCGTTCCAGTAGTAACTCATCACTTCAATTCAACAATGGCCTGGGCGAGGATCTTCACGAGGTAGAGC
TCTGATACCTGAACAAAAGGGTAAAAGATGAGGTGCGTCCATCGTGTAAATCAATCATATGGCCATGTTTTGTTTTTCAT
GTCATTTTGTATTTAATATCTATGATGTCTAGAGAGGAAACAAAGGAGCGGCGTCCCTTTTCTTTTCTTTTCTTTTTTTA
CATGAAAGAAGTATGCGGATGCCGTTGTACAGATAGATCACTGCCAGTTGATTTGAGATGCCAAAGGAAAGAAATGACTT
GGTGTAAAGTGATTACTTTGCTACTTTCTTTTACCCCTTTAGAGCATTTGTTCAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis