Browse Element(s) Details


Os.22911.1.S1_a_at

Description gb:AK071985.1
DB_XREF= gi:32982008
TID=Os.22911.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU033004(S0924),C74754(E50863) correspond to a region of the predicted gene.~Similar to Rat mRNA for dihydrolipoamide acetyltransferase. (D10655) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091O21, full insert sequence.
FL= gb:AK071985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0163011/11pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01580NANA6+343157..344655Protease inhibitor/seed storage/LTP family protein
LOC_Os06g01590Os.31913.1.S1_at11/116+346009..347516L-lactate dehydrogenase A, putative, expressed
LOC_Os06g01600OsAffx.15215.1.S1_x_at6/116+350614..350976hypothetical protein
LOC_Os06g01610OsAffx.15216.1.S1_at11/116+358669..360582Vacuolar processing enzyme precursor, putative
LOC_Os06g01620Os.31716.2.A1_at9/116+364316..366066GRAS family transcription factor containing protein, expressed
LOC_Os06g01630Os.22911.1.S1_a_at11/116+369096..373968pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os06g01640Os.49738.1.S1_at11/116+374706..381665Protein arginine N-methyltransferase, putative, expressed
LOC_Os06g01650Os.22256.2.S1_x_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.22256.1.S1_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.22256.2.S1_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.1.S1_at3/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.2.S1_x_at2/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.2.S1_at2/116+386223..392012expressed protein
LOC_Os06g01660Os.44872.1.S1_at11/116+393580..396914Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01660Os.44872.2.S1_x_at11/116+393580..396914Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01670Os.23936.1.S1_at11/116+397679..402494myb family transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004742molecular_functiondihydrolipoyllysine-residue acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22911.1.S1_a_at--912--9111Chr06:370130..370154 (25 bp)
TGCTGACAAGAAGGGCCTAGCCACT
LOC_Os06g01630
Os.22911.1.S1_a_at--823--4451Chr06:370116..370140 (25 bp)
GCCTAGCCACTATCGCTGATGAGGT
LOC_Os06g01630
Os.22911.1.S1_a_at--971--1051Chr06:369969..369993 (25 bp)
AGGGTGGCACTTTCACTGTGTCAAA
LOC_Os06g01630
Os.22911.1.S1_a_at--756--3891Chr06:369954..369978 (25 bp)
CTGTGTCAAACTTGGGAGGCCCTTT
LOC_Os06g01630
Os.22911.1.S1_a_at--55--9411Chr06:369906..369930 (25 bp)
TCGTAAATCCTCCACAATCAGCAAT
LOC_Os06g01630
Os.22911.1.S1_a_at--832--3131Chr06:369889..369908 (20 bp)
AATTTTGGCTATTGGCTCAGCTGAG
LOC_Os06g01630
Os.22911.1.S1_a_at--586--6371Chr06:369723..369747 (25 bp)
GATCCCTGGAGCTGAGGGTCAGTTT
LOC_Os06g01630
Os.22911.1.S1_a_at--1084--5331Chr06:369698..369722 (25 bp)
GAAGTTGGTTCGTTTATGTCAGCAA
LOC_Os06g01630
Os.22911.1.S1_a_at--1073--9131Chr06:369666..369689 (24 bp)
TGCGACCACCGGGTCATTGACGGTG
LOC_Os06g01630
Os.22911.1.S1_a_at--860--51Chr06:369551..369674 (25 bp)
ATTGACGGTGCCATTGGTGCAGAAT
LOC_Os06g01630
Os.22911.1.S1_a_at--885--7331Chr06:369535..369559 (25 bp)
GTGCAGAATGGATGAAGGCGTTCAA
LOC_Os06g01630
Target Sequence 
TGCTGACAAGAAGGGCCTAGCCACTATCGCTGATGAGGTGAAGCAACTNGGCTCAGAGAGCAAGGGACAACAGNCTTAAG
CCAGAGGATTATGAGGGTGGCACTTTCACTGTGTCAAACTTGGGAGGCCCTTTTGGAATTAAGCAATTCTGTGCCATCGT
AAATCCTCCACAATCAGCAATTTTGGCTATTGGCTCAGCTGAGAAGAGGGTGATCCCTGGAGCTGAGGGTCAGTTTGAAG
TTGGTTCGTTTATGTCAGCAACATTGAGCTGCGACCACCGGGTCATTGACGGTGCCATTGGTGCAGAATGGATGAAGGCG
TTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22911.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis