Browse Element(s) Details


OsAffx.15216.1.S1_at

Description tigr:9634.m00059
TID=OsAffx.15216.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peptidase C13 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0161011/11Vacuolar processing enzyme precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01560NANA6+329733..335889retrotransposon protein, putative, unclassified
LOC_Os06g01570NANA6+336519..339810retrotransposon protein, putative, unclassified
LOC_Os06g01580NANA6+343157..344655Protease inhibitor/seed storage/LTP family protein
LOC_Os06g01590Os.31913.1.S1_at11/116+346009..347516L-lactate dehydrogenase A, putative, expressed
LOC_Os06g01600OsAffx.15215.1.S1_x_at6/116+350614..350976hypothetical protein
LOC_Os06g01610OsAffx.15216.1.S1_at11/116+358669..360582Vacuolar processing enzyme precursor, putative
LOC_Os06g01620Os.31716.2.A1_at9/116+364316..366066GRAS family transcription factor containing protein, expressed
LOC_Os06g01630Os.22911.1.S1_a_at11/116+369096..373968pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os06g01640Os.49738.1.S1_at11/116+374706..381665Protein arginine N-methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006624biological_processvacuolar protein processing or maturation
GO:0010214biological_processseed coat development
GO:0012501biological_processprogrammed cell death
GO:0000323cellular_componentlytic vacuole
GO:0005615cellular_componentextracellular space
GO:0003923molecular_functionGPI-anchor transamidase activity
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15216.1.S1_at--840--8731Chr06:360065..360089 (25 bp)
TGTCACACGTCAGTCGGTACGGCGA
LOC_Os06g01610
OsAffx.15216.1.S1_at--1136--9691Chr06:360148..360172 (25 bp)
TCAACAGCTAGTGCCGTCATCGATG
LOC_Os06g01610
OsAffx.15216.1.S1_at--521--5411Chr06:360195..360219 (25 bp)
GAACCAACGGGATGCGGGACTCGTC
LOC_Os06g01610
OsAffx.15216.1.S1_at--788--5711Chr06:360212..360236 (25 bp)
GACTCGTCTACCTGTGGCGTAAGTA
LOC_Os06g01610
OsAffx.15216.1.S1_at--8--7651Chr06:360263..360287 (25 bp)
GGGAGCGCCTTCTCCGAGAAATGGA
LOC_Os06g01610
OsAffx.15216.1.S1_at--647--831Chr06:360283..360307 (25 bp)
ATGGAGAGGCGATCACGCGTCGACA
LOC_Os06g01610
OsAffx.15216.1.S1_at--790--1511Chr06:360307..360331 (25 bp)
AGCAGCGTCGACCTCATCGGAGACA
LOC_Os06g01610
OsAffx.15216.1.S1_at--344--491Chr06:360322..360346 (25 bp)
ATCGGAGACATCCTCTTGGGCGACT
LOC_Os06g01610
OsAffx.15216.1.S1_at--1001--8571Chr06:360395..360419 (25 bp)
TGGTTGACGACTGGGATTGCCTCAA
LOC_Os06g01610
OsAffx.15216.1.S1_at--32--6591Chr06:360409..360433 (25 bp)
GATTGCCTCAAGTCCATGGTGCGCA
LOC_Os06g01610
OsAffx.15216.1.S1_at--291--811Chr06:360467..360491 (25 bp)
ATGGGATGAAGCACACACGCGCCTT
LOC_Os06g01610
Target Sequence 
TGTCACACGTCAGTCGGTACGGCGACCTAAGCCTCTCCTCCCAACCCGTCAGCCTCTACTACTTGCCCCCCGGCCCCGGC
ACCTCAACAGCTAGTGCCGTCATCGATGACGAAGGCCGCGTCGGCGGCGTGAACCAACGGGATGCGGGACTCGTCTACCT
GTGGCGTAAGTACTACGAGGAGAAATCGGTGGAGGCATGGGAGCGCCTTCTCCGAGAAATGGAGAGGCGATCACGCGTCG
ACAGCAGCGTCGACCTCATCGGAGACATCCTCTTGGGCGACTCCTCCAAGAAGAAGCTCCTGCACATCCGGCGTCCGGCG
GGGCAGCCGCTGGTTGACGACTGGGATTGCCTCAAGTCCATGGTGCGCACGTTCGAGGCTCACTGTGGCCCGCTGGGGCA
GTATGGGATGAAGCACACACGCGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis