Browse Element(s) Details


Os.31913.1.S1_at

Description gb:AK106504.1
DB_XREF= gi:32991713
TID=Os.31913.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Rice mRNA for lactate dehydrogenase. (D13817) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F11, full insert sequence.
FL= gb:AK106504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0159011/11L-lactate dehydrogenase A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01534OsAffx.22848.4.S1_at2/116+318704..324531retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01534OsAffx.22848.3.S1_x_at1/116+318704..324531retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01534OsAffx.22848.4.S1_x_at1/116+318704..324531retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g01550Os.43567.1.S1_x_at7/116+326878..327657transposon protein, putative, unclassified
LOC_Os06g01550Os.38172.1.S1_x_at3/116+326878..327657transposon protein, putative, unclassified
LOC_Os06g01560NANA6+329733..335889retrotransposon protein, putative, unclassified
LOC_Os06g01570NANA6+336519..339810retrotransposon protein, putative, unclassified
LOC_Os06g01580NANA6+343157..344655Protease inhibitor/seed storage/LTP family protein
LOC_Os06g01590Os.31913.1.S1_at11/116+346009..347516L-lactate dehydrogenase A, putative, expressed
LOC_Os06g01600OsAffx.15215.1.S1_x_at6/116+350614..350976hypothetical protein
LOC_Os06g01610OsAffx.15216.1.S1_at11/116+358669..360582Vacuolar processing enzyme precursor, putative
LOC_Os06g01620Os.31716.2.A1_at9/116+364316..366066GRAS family transcription factor containing protein, expressed
LOC_Os06g01630Os.22911.1.S1_a_at11/116+369096..373968pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005739cellular_componentmitochondrion
GO:0042579cellular_componentmicrobody
GO:0004457molecular_functionlactate dehydrogenase activity
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31913.1.S1_at--1015--7831Chr06:346523..346547 (25 bp)
GGTACACGTCGTGGGCCATCGGCTA
LOC_Os06g01590
Os.31913.1.S1_at--153--4551Chr06:346263..346287 (25 bp)
GCCCTCGGCCTCTAAATTCATTAAT
LOC_Os06g01590
Os.31913.1.S1_at--26--131Chr06:346248..346272 (25 bp)
ATTCATTAATTACTACGCCAACCCG
LOC_Os06g01590
Os.31913.1.S1_at--964--4371Chr06:346232..346256 (25 bp)
GCCAACCCGTTTATATATGCCCATA
LOC_Os06g01590
Os.31913.1.S1_at--38--371Chr06:346195..346219 (25 bp)
ATAATCGTCGTGCTAATGCCTATCG
LOC_Os06g01590
Os.31913.1.S1_at--634--10131Chr06:346162..346186 (25 bp)
TATGCATCATCGTATATGTCGGTCG
LOC_Os06g01590
Os.31913.1.S1_at--921--9391Chr06:346153..346177 (25 bp)
TCGTATATGTCGGTCGATCGAAGCT
LOC_Os06g01590
Os.31913.1.S1_at--797--5371Chr06:346134..346158 (25 bp)
GAAGCTTAATTTCATGGCCGCCCGG
LOC_Os06g01590
Os.31913.1.S1_at--182--4211Chr06:346118..346142 (25 bp)
GCCGCCCGGGTTGTAATAAGCTACT
LOC_Os06g01590
Os.31913.1.S1_at--813--9791Chr06:346102..346126 (25 bp)
TAAGCTACTATTCTCATTGTGTGAT
LOC_Os06g01590
Os.31913.1.S1_at--1032--4811Chr06:346071..346095 (25 bp)
GCTCTATTTCTCTGATTGAGCTAAT
LOC_Os06g01590
Target Sequence 
GGTACACGTCGTGGGCCATCGGCTACTCCGTCGCCAGCATCGCCTGGTCGCTGCTCCGTGACCAGCGCCGCATCCACCCG
GTCTCCGTCCTCGCCAAGGGCCTTGTCCGTGGCGTCCCCGCCGACCGCGAGCTCTTCCTCAGCCTGCCCGCTCGCCTCGG
CCGCGCCGGCGTGCTTGGCGTCGCCGCCGAGCTGGTGCTCACCGACGAGGAGGAGAGGAGGCTTCGCATCTCCGCCGAAA
CCCTCTGGGGATACTGCCACGCCCTCGGCCTCTAAATTCATTAATTACTACGCCAACCCGTTTATATATGCCCATATATA
TATGATTAATAATCGTCGTGCTAATGCCTATCGATCGATATTATGCATCATCGTATATGTCGGTCGATCGAAGCTTAATT
TCATGGCCGCCCGGGTTGTAATAAGCTACTATTCTCATTGTGTGATTAATTAGCTCTATTTCTCTGATTGAGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis