Browse Element(s) Details

Os.49738.1.S1_at

Description

gb:AK099594.1
DB_XREF= gi:32984803
TID=Os.49738.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044A06, full insert sequence.
FL= gb:AK099594.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01640	11/11	Protein arginine N-methyltransferase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01600	OsAffx.15215.1.S1_x_at	6/11	6	+	350614..350976	hypothetical protein
LOC_Os06g01610	OsAffx.15216.1.S1_at	11/11	6	+	358669..360582	Vacuolar processing enzyme precursor, putative
LOC_Os06g01620	Os.31716.2.A1_at	9/11	6	+	364316..366066	GRAS family transcription factor containing protein, expressed
LOC_Os06g01630	Os.22911.1.S1_a_at	11/11	6	+	369096..373968	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os06g01640	Os.49738.1.S1_at	11/11	6	+	374706..381665	Protein arginine N-methyltransferase, putative, expressed
LOC_Os06g01650	Os.22256.2.S1_x_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.1.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.2.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.1.S1_at	3/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_x_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01660	Os.44872.1.S1_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01660	Os.44872.2.S1_x_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01670	Os.23936.1.S1_at	11/11	6	+	397679..402494	myb family transcription factor, putative, expressed
LOC_Os06g01680	Os.9729.3.S1_a_at	11/11	6	+	402739..409270	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49738.1.S1_at--606--147	1	Chr06:380522..380546 (25 bp)	AGCAAGGTCCTTGTCTGCCGTATTA	LOC_Os06g01640
Os.49738.1.S1_at--1106--231	1	Chr06:380655..380679 (25 bp)	AAAGTGTACTCTCTGATGGATTTCA	LOC_Os06g01640
Os.49738.1.S1_at--324--1033	1	Chr06:380675..380699 (25 bp)	TTTCAACTTTTCTGAGCCAATCCAC	LOC_Os06g01640
Os.49738.1.S1_at--1041--169	1	Chr06:380689..380713 (25 bp)	AGCCAATCCACTCCTGTTTTGGGAA	LOC_Os06g01640
Os.49738.1.S1_at--386--633	1	Chr06:381364..381388 (25 bp)	GATGCATGTAGAGGCGTCCTTCGAT	LOC_Os06g01640
Os.49738.1.S1_at--638--381	1	Chr06:381433..381457 (25 bp)	CTCCTGAGGCGATGCTGTATTGCTA	LOC_Os06g01640
Os.49738.1.S1_at--833--687	1	Chr06:381449..381473 (25 bp)	GTATTGCTATGCCATCTGTGTGTGC	LOC_Os06g01640
Os.49738.1.S1_at--1035--747	1	Chr06:381466..381490 (25 bp)	GTGTGTGCGCCTATGCAACATGGGA	LOC_Os06g01640
Os.49738.1.S1_at--746--21	1	Chr06:381494..381518 (25 bp)	ATATTGCTTGCGTAATTCGGCCCAG	LOC_Os06g01640
Os.49738.1.S1_at--40--209	1	Chr06:381539..381563 (25 bp)	ACATTAGTGTTTTCATCCCGCAGAT	LOC_Os06g01640
Os.49738.1.S1_at--144--3	1	Chr06:381582..381606 (25 bp)	GTGCGTAGGCCACAAACCGTTCAGT	LOC_Os06g01640

Target Sequence

AGCAAGGTCCTTGTCTGCCGTATTANGTATGGCAATGTGGTTATACCAAGAAATTAAGTAAAGTGTACTCTCTGATGGAT
TTCAACTTTTCTGAGCCAATCCACTCCTGTTTTGGGAAAACAAAGATCGAGTTTTCTCATGATGGAACATGCCATGGTTT
TGCGGTTTGGATTGATTGGGTTCTTGATGAGAGAAAATCCGTTGTGTTAACAACCGGACCAGATAACCGATACTGGAAAC
AAGGAGTACAGCTCTTTNGCAAGCCTGTAGAAGTAAATCCAGGCAAGTCGGTGATGCATGTAGAGGCGTCCTTCGATCCT
TCCACGGGTGAGATAACGTTCAGCAGTTCATCAACAACCTGCTCCTGAGGCGATGCTGTATTGCTATGCCATCTGTGTGT
GCGCCTATGCAACATGGGAAGCATATTGCTTGCGTAATTCGGCCCAGCGATTACGGCGCACCGTAGGACATTAGTGTTTT
CATCCCGCAGATATTTGGCAGTGGTTATTTGTGCGTAGGCCACAAACCGTTCAGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis