Browse Element(s) Details


Os.32263.2.S1_x_at

Description gb:NM_191303.1
DB_XREF= gi:34909689
GEN=B1131G08.3
TID=Os.32263.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131G08.3 (B1131G08.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1131G08.3 (B1131G08.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5531010/11HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55260Os.9238.1.A2_at11/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55260Os.9238.1.A1_a_at10/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55270Os.9238.2.S1_at11/111+32138193..32141441SGS domain containing protein, expressed
LOC_Os01g55280Os.26380.2.S1_x_at11/111+32142365..32143622expressed protein
LOC_Os01g55290Os.23673.1.S1_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55290Os.42075.1.A1_x_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55300Os.24887.2.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.3.S1_x_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.1.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55310Os.32263.2.S1_x_at10/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55310Os.32263.1.S1_at9/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55320NANA1+32167288..32168053heavy metal-associated domain containing protein, expressed
LOC_Os01g55330NANA1+32173237..32173632hypothetical protein
LOC_Os01g55340Os.4186.1.S1_a_at11/111+32177389..32178465Dof domain, zinc finger family protein, expressed
LOC_Os01g55350Os.22285.1.S1_a_at11/111+32186181..32191879Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed
LOC_Os01g55350Os.45901.1.S1_x_at1/111+32186181..32191879Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0003919molecular_functionFMN adenylyltransferase activity
GO:0008531molecular_functionriboflavin kinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32263.2.S1_x_at--18--1311Chr01:32166181..32166205 (25 bp)
AGATGTACAGGGAGTCCACCACCGG
LOC_Os01g55310
Os.32263.2.S1_x_at--978--6431Chr01:32166156..32166180 (25 bp)
GATCATCGCCGATTATGGGCTACCG
LOC_Os01g55310
Os.32263.2.S1_x_at--85--7591Chr01:32166140..32166164 (25 bp)
GGGCTACCGCTCACCGTAGAAGAGT
LOC_Os01g55310
Os.32263.2.S1_x_at--846--8371Chr01:32166108..32166132 (25 bp)
GGCGATATACCCGTTGTACCTGAAA
LOC_Os01g55310
Os.32263.2.S1_x_at--777--2431Chr01:32165990..32166014 (25 bp)
AAAAGGCAAAGCCACTCCCTGGAGT
LOC_Os01g55310
Os.32263.2.S1_x_at--548--8291Chr01:32165960..32165984 (25 bp)
GGCTTGTCAAGCATCTTCATAGGAA
LOC_Os01g55310
Os.32263.2.S1_x_at--659--2051Chr01:32165920..32165944 (25 bp)
ACTTGCTTCAAATTCCGTCAGGAGA
LOC_Os01g55310
Os.32263.2.S1_x_at--66--1731Chr01:32165234..32165255 (22 bp)
ACCAGATTTCTGGAGGCCGCAAAAG
LOC_Os01g55310
Os.32263.2.S1_x_at--213--5351NONE
GAAGATTCTCTCACATATATTTCCT
NONE
Os.32263.2.S1_x_at--1008--7991Chr01:32163710..32163734 (25 bp)
GGAGGAGCCCCTGAAGCTGCAGTTA
LOC_Os01g55310
Os.32263.2.S1_x_at--1040--1591Chr01:32163696..32163720 (25 bp)
AGCTGCAGTTAGTTGGGTACATCCG
LOC_Os01g55310
Target Sequence 
AGATGTACAGGGAGTCCACCACCGGGATCATCGCCGATTATGGGCTACCGCTCACCGTAGAAGAGTACGCTGTGGCGATA
TACCCGTTGTACCTGAAAAGGTGGCAAAAGGCAAAGCCACTCCCTGGAGTCGAGAGGCTTGTCAAGCATCTTCATAGGAA
CGGAGTGCCTCTAGCACTTGCTTCAAATTCCGTCAGGAGAAACATCGATCACAAACTGTTAAAATTAAAAGATTGGAAAG
ACTGTTTTTCTGTGATTCTTGGTGGAGACCAGATTTCTGGAGGCCGCAAAAGGACTTGGTGTAAATCCATCATCATGTTT
GGTCATAGAAGATTCTCTCACATATATTTCCTTGATTCCTGTTGTAAGATAACAACGGAGGAGCCCCTGAAGCTGCAGTT
AGTTGGGTACATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32263.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis