Browse Element(s) Details


Os.32298.1.S1_at

Description gb:AK105352.1
DB_XREF= gi:32990561
TID=Os.32298.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1217B09.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A09, full insert sequence.
FL= gb:AK105352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0888010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08840Os.53795.1.S1_at10/113+4552284..4554667expressed protein
LOC_Os03g08850Os.11213.1.S1_at11/113+4563543..4565965Leucine Rich Repeat family protein, expressed
LOC_Os03g08860Os.11749.1.S1_at11/113+4571606..4573969FH protein interacting protein FIP1, putative, expressed
LOC_Os03g08870Os.39172.1.S1_at11/113+4575202..4577373expressed protein
LOC_Os03g08880Os.32298.1.S1_at10/113+4578041..4579547expressed protein
LOC_Os03g08890OsAffx.12791.1.S1_at11/113+4582933..4583219hypothetical protein
LOC_Os03g08900NANA3+4586085..4586520expressed protein
LOC_Os03g08910Os.43896.1.S1_at9/113+4593352..4595351MatE family protein, expressed
LOC_Os03g08920Os.37432.1.S1_at11/113+4595895..4597143Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006863biological_processpurine transport
GO:0010184biological_processcytokinin transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0005345molecular_functionpurine transporter activity
GO:0015211molecular_functionpurine nucleoside transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32298.1.S1_at--160--9431Chr03:4578510..4578534 (25 bp)
TCGTGGCAGCTGCTCAACCTGGGCA
LOC_Os03g08880
Os.32298.1.S1_at--674--8471Chr03:4578260..4578284 (25 bp)
TGGCGCTGGCACAGAAGACCGCAGA
LOC_Os03g08880
Os.32298.1.S1_at--709--1451Chr03:4578248..4578272 (25 bp)
AGAAGACCGCAGACGTGGAGTCAGC
LOC_Os03g08880
Os.32298.1.S1_at--1151--9651Chr03:4578228..4578252 (25 bp)
TCAGCGGCGCCTTAGTTTACAATGG
LOC_Os03g08880
Os.32298.1.S1_at--249--2231Chr03:4578210..4578234 (25 bp)
ACAATGGGATTGTACGTGTCTACTT
LOC_Os03g08880
Os.32298.1.S1_at--590--7451Chr03:4578195..4578219 (25 bp)
GTGTCTACTTGGGTGGGTCGTATAC
LOC_Os03g08880
Os.32298.1.S1_at--63--1931Chr03:4578164..4578188 (25 bp)
ACGGGTGTAGTGAACATGTTTCTCA
LOC_Os03g08880
Os.32298.1.S1_at--322--2111Chr03:4578151..4578175 (25 bp)
ACATGTTTCTCAGTGTAGTTTTACA
LOC_Os03g08880
Os.32298.1.S1_at--654--7531Chr03:4578121..4578145 (25 bp)
GTGGCATGCATAAATTTTGTACGAG
LOC_Os03g08880
Os.32298.1.S1_at--1022--9591Chr03:4578068..4578092 (25 bp)
TCATTATATGGTACTAGCACGCAGA
LOC_Os03g08880
Os.32298.1.S1_at--539--2731Chr03:4578041..4578065 (25 bp)
AAGCAAGTGCTATAGTTGTATCAAC
NONE
Target Sequence 
TCGTGGCAGCTGCTCAACCTGGGCATCATGGGGCTCATCACCTGCGCGTCGTCGCTGCTCGCCGGCATCATGATCGCCGT
GCTCCTGCCGCTCTCGCAGGTCCTCGCCGTCATCTTCCTCCACGAGAAGTTCGACGGGACGAAGGGCATCGCGCTCGTGC
TCTCGCTCTGGGGATTCGCCTCCTACCTCTACGGCGAGAAGGCGCAGAAGAAGAAGGAGGCGCAGAAGATGCGCGAGCGC
GAGCAGGAGGTGGCGCTGGCACAGAAGACCGCAGACGTGGAGTCAGCGGCGCCTTAGTTTACAATGGGATTGTACGTGTC
TACTTGGGTGGGTCGTATACATATTTACGGGTGTAGTGAACATGTTTCTCAGTGTAGTTTTACAGTACAGTGGCATGCAT
AAATTTTGTACGAGATTGTTTCAAATTCTGTATGACATTGTTTCATTATATGGTACTAGCACGCAGAAAAAGCAAGTGCT
ATAGTTGTATCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis