Browse Element(s) Details


Os.32644.1.S1_at

Description gb:AK101081.1
DB_XREF= gi:32986290
TID=Os.32644.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1015F07.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024D13, full insert sequence.
FL= gb:AK101081.1 gb:AK103401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g035707/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03550Os.18178.1.S1_at7/113+1529769..1532164bZIP family transcription factor, putative, expressed
LOC_Os03g03560Os.32569.1.S1_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03560Os.32569.2.S1_x_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03570Os.32644.1.S1_at7/113+1540546..1543309leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g03580Os.32644.1.S2_at5/113+1543806..1544896hypothetical protein
LOC_Os03g03590Os.17941.2.S1_x_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03590Os.17941.1.S1_s_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03600Os.5826.2.S1_a_at11/113+1557698..1559253Fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
LOC_Os03g03610Os.14984.1.S1_a_at11/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03610Os.54124.1.S1_at1/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32644.1.S1_at--548--7911Chr03:1542908..1542932 (25 bp)
GGATTTGGAAAGCTTTTGCCTATTC
LOC_Os03g03570
Os.32644.1.S1_at--1051--1231Chr03:1542953..1542977 (25 bp)
AGATTGCATGCTGCCATTGGGTACA
LOC_Os03g03570
Os.32644.1.S1_at--1031--71Chr03:1542977..1543001 (25 bp)
ATTGCCCCGGAGTTAGCATCTCCAA
LOC_Os03g03570
Os.32644.1.S1_at--362--3471Chr03:1543104..1543128 (25 bp)
CAGTGGTTCTGCGTGATTATGTTAG
LOC_Os03g03570
Os.32644.1.S1_at--639--7631Chr03:1543145..1543169 (25 bp)
GGGACTGTGTCAGACTGCTTTGATC
LOC_Os03g03570
Os.32644.1.S1_at--793--6191Chr03:1543190..1543214 (25 bp)
GAGGCTGAATTAGTCCAAGTGCTCA
LOC_Os03g03570
Os.32644.1.S1_at--588--1031Chr03:1543219..1543243 (25 bp)
AGGTCTGGTATGCACTTCGAACACA
LOC_Os03g03570
Os.32644.1.S1_at--274--9751Chr03:1543300..1543324 (25 bp)
TAATTCATGATCTCCTGACGTCACG
NONE
Os.32644.1.S1_at--994--8931Chr03:1543315..1543339 (25 bp)
TGACGTCACGGTACAGTAGCAGAAT
NONE
Os.32644.1.S1_at--523--10351Chr03:1543397..1543421 (25 bp)
TTTATTCTTTATTGTGTCCCCAGTC
NONE
Os.32644.1.S1_at--379--7431Chr03:1543410..1543434 (25 bp)
GTGTCCCCAGTCACATTTGTAAAAT
NONE
Target Sequence 
GGATTTGGAAAGCTTTTGCCTATTCTAGGTAGCTATGAATTGAGTAGATTGCATGCTGCCATTGGGTACATTGCCCCGGA
GTTAGCATCTCCAAGCTTGAGATATAGTGATAAGAGTGATGTATTTAGCTTTGGTGTGGTGTTGCTTGAGATTGTGACAG
GGAGGAAACCAGTGGAGAGCCCTGGGGTGGCGACAGCAGTGGTTCTGCGTGATTATGTTAGGGCGATATTGGAGGATGGG
ACTGTGTCAGACTGCTTTGATCGGAGCATGAAGGGATTTGTTGAGGCTGAATTAGTCCAAGTGCTCAAATTAGGTCTGGT
ATGCACTTCGAACACACCATCTGCCCGACCAAACATGGCAGAGGTGGTACAGTACCTGGAGTCTGTTAGAACTAATTCAT
GATCTCCTGACGTCACGGTACAGTAGCAGAATAGGATGTTAAAACAGGAAAAAACGTTTTCTGGTTTTTGAACAGATGAT
CACATTGTTTTTATTCTTTATTGTGTCCCCAGTCACATTTGTAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis