Browse Element(s) Details


Os.32644.1.S2_at

Description gb:AK103401.1
DB_XREF= gi:32988610
TID=Os.32644.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1015F07.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128B10, full insert sequence.
FL= gb:AK101081.1 gb:AK103401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g035805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03550Os.18178.1.S1_at7/113+1529769..1532164bZIP family transcription factor, putative, expressed
LOC_Os03g03560Os.32569.1.S1_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03560Os.32569.2.S1_x_at11/113+1532402..1537496FHA domain containing protein, expressed
LOC_Os03g03570Os.32644.1.S1_at7/113+1540546..1543309leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g03580Os.32644.1.S2_at5/113+1543806..1544896hypothetical protein
LOC_Os03g03590Os.17941.2.S1_x_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03590Os.17941.1.S1_s_at11/113+1546327..1550330K+ efflux antiporter, putative, expressed
LOC_Os03g03600Os.5826.2.S1_a_at11/113+1557698..1559253Fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
LOC_Os03g03610Os.14984.1.S1_a_at11/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03610Os.54124.1.S1_at1/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32644.1.S2_at--397--3411Chr03:1544176..1544200 (25 bp)
CAGAATGCGCAGGTGGTTCCAGTCG
LOC_Os03g03580
Os.32644.1.S2_at--1004--1091Chr03:1544250..1544274 (25 bp)
AGTGGAGACACTTCAGCGCTAGATT
LOC_Os03g03580
Os.32644.1.S2_at--238--1251Chr03:1544270..1544294 (25 bp)
AGATTTTCAGTTTCCACGGGCACCA
LOC_Os03g03580
Os.32644.1.S2_at--420--8971Chr03:1544335..1544359 (25 bp)
TGAAGAATCCGTGGAGTCCTCCCAA
LOC_Os03g03580
Os.32644.1.S2_at--1116--8071Chr03:1544378..1544402 (25 bp)
GGAGCTTATGATGCTTAGCCGCAAA
LOC_Os03g03580
Os.32644.1.S2_at--776--7471Chr03:1544885..1544909 (25 bp)
GTGTGTTCTTAGCTGCAAGGCACCA
NONE
Os.32644.1.S2_at--754--10691Chr03:1544913..1544937 (25 bp)
TTGCGGCACATGGACGAACTGTACT
NONE
Os.32644.1.S2_at--979--6991Chr03:1544933..1544957 (25 bp)
GTACTGTGTGCATGTGAGATCCCAT
NONE
Os.32644.1.S2_at--632--10511Chr03:1544972..1544996 (25 bp)
TTCAGCAAGGCGTGGCTTGTTCCAA
NONE
Os.32644.1.S2_at--528--7051Chr03:1544998..1545022 (25 bp)
TGTAAAATCCTAGCGGTTTCGGTGT
NONE
Os.32644.1.S2_at--664--9431Chr03:1545016..1545040 (25 bp)
TCGGTGTTGTTTGTACTGCCATGTA
NONE
Target Sequence 
CAGAATGCGCAGGTGGTTCCAGTCGCCATGGCACATGGTATTCATTTTCAGAAACAGAAGCTTACAGCAACTCAAGTGGA
GACACTTCAGCGCTAGATTTTCAGTTTCCACGGGCACCATCAGAGAAAAGCTGGGAGGTTGCTAATGACGATGATCAGCT
GAAGAATCCGTGGAGTCCTCCCAAGAGCACATTTACACTGGAGGAGCTTATGATGCTTAGCCGCAAATTGTGCTGCGGGC
AAGGGATGCCAGTTGATGTCAAGAAGAAGAACCTCTCCCTCTCATCAACGGAACTCATCAAGAAGTTTTTAATTGTGTGT
TCTTAGCTGCAAGGCACCATGGTTGCGGCACATGGACGAACTGTACTGTGTGCATGTGAGATCCCATAATAATTGAGCAA
GTTCAGCAAGGCGTGGCTTGTTCCAAGTGTAAAATCCTAGCGGTTTCGGTGTTGTTTGTACTGCCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32644.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis