Browse Element(s) Details


Os.32827.1.S1_at

Description gb:AK102737.1
DB_XREF= gi:32987946
TID=Os.32827.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) lipase-like protein (OJ1159_D09.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106C14, full insert sequence.
FL= gb:AK102737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4629011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed
LOC_Os01g46250OsAffx.23684.1.S1_x_at11/111+26627042..26629765Lipase family protein
LOC_Os01g46260Os.57336.1.S1_at10/111+26633086..26634085expressed protein
LOC_Os01g46270OsAffx.9219.1.S1_at11/111+26638916..26639962wax synthase isoform 2, putative, expressed
LOC_Os01g46280OsAffx.9218.1.S1_s_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46280OsAffx.9218.2.S1_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46290Os.32827.1.S1_at11/111+26648264..26651617Lipase family protein, expressed
LOC_Os01g46300NANA1+26653326..26653755hypothetical protein
LOC_Os01g46310OsAffx.31869.5.S1_x_at2/111+26658893..26659276retrotransposon protein, putative, unclassified
LOC_Os01g46320NANA1+26675299..26678631transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32827.1.S1_at--386--1891Chr01:26651017..26651041 (25 bp)
ACGATCAGTTCAAGAGGGCCTTCGA
LOC_Os01g46290
Os.32827.1.S1_at--166--6751Chr01:26651024..26651048 (25 bp)
GTTCAAGAGGGCCTTCGACTCGACG
LOC_Os01g46290
Os.32827.1.S1_at--320--6751Chr01:26651261..26651285 (25 bp)
GTTCAGCCTTGTGGTGGACCGTGAC
LOC_Os01g46290
Os.32827.1.S1_at--1055--8511Chr01:26651275..26651299 (25 bp)
TGGACCGTGACCTGGCGCTGGTGAA
LOC_Os01g46290
Os.32827.1.S1_at--507--1631Chr01:26651385..26651409 (25 bp)
AGCGGGCGCTGGGTCTTGCAAGATC
LOC_Os01g46290
Os.32827.1.S1_at--31--2571Chr01:26651466..26651490 (25 bp)
AACTGATGGGTTTATTGCTTGGATG
LOC_Os01g46290
Os.32827.1.S1_at--833--2371Chr01:26651506..26651530 (25 bp)
AAACATGAATAGTAAGGGCCGTGGA
LOC_Os01g46290
Os.32827.1.S1_at--384--7071Chr01:26651517..26651541 (25 bp)
GTAAGGGCCGTGGAAATGCAGATAT
LOC_Os01g46290
Os.32827.1.S1_at--957--8751Chr01:26651548..26651572 (25 bp)
TGTATGTACGTCTGAAAATTCTGAG
LOC_Os01g46290
Os.32827.1.S1_at--405--9531Chr01:26651587..26651611 (25 bp)
TCTTACGGCCCCTTTGAAACGTATG
LOC_Os01g46290
Os.32827.1.S1_at--669--8411Chr01:26651593..26651617 (25 bp)
GGCCCCTTTGAAACGTATGATTATC
LOC_Os01g46290
Target Sequence 
ACGATCAGTTCAAGAGGGCCTTCGACTCGACGTCCAACCTGAGCCTGCTCCGCGTCCGCAACGCGCCGGACATCGTGCCG
ACCATCCTGCCGTCGGCCTTCTTCAAGGACGTCGGCGCGGAGCTGCTCGTGGACACGCGCCGGTCGCCGTACCTGAAGNA
CCCGGCGGGCCCGGCCCAGTGGCACAACCTCGAGTGCTACCTGCACGCCGTCGCGGGCACGCAGGGCGCCGGCGACGGCG
CGGGGTTCAGCCTTGTGGTGGACCGTGACCTGGCGCTGGTGAACAAGGAAGTGGACGCGCTCAGGGACGAGTACCAGGTG
CCGGCGGCGTGGTGGGTGGAGAAGAACAAGGGCATGGTGCAGAACGCGAGCGGGCGCTGGGTCTTGCAAGATCANGAGGA
GGGCAACCTTGCAATGTGATGGATTTGGGGAATTTTGTGGAATCCAATAAACTGATGGGTTTATTGCTTGGATGGAAGTT
TTCCAAGAAAAACATGAATAGTAAGGGCCGTGGAAATGCAGATATAAATTATGTATGTACGTCTGAAAATTCTGAGTTGT
AACTGAAAATTCTTACGGCCCCTTTGAAACGTATGATTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis