Browse Element(s) Details


Os.32904.1.S1_at

Description gb:AK102452.1
DB_XREF= gi:32987661
TID=Os.32904.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093P08, full insert sequence.
FL= gb:AK102452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5228011/11mannitol dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52250Os.38235.1.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52250Os.38235.2.S1_x_at1/114+30832100..30832969transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g52260Os.38235.1.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.1.S1_x_at11/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52260Os.38235.2.S1_x_at10/114+30842620..30843627Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g52270Os.3437.1.S1_at11/114+30844804..30849804coatomer epsilon subunit, putative, expressed
LOC_Os04g52280Os.32904.1.S1_at11/114+30850553..30854787mannitol dehydrogenase, putative, expressed
LOC_Os04g52290Os.4898.1.S1_at11/114+30854574..30857262pentatricopeptide, putative, expressed
LOC_Os04g52300Os.9807.1.S1_at11/114+30857445..30858798expressed protein
LOC_Os04g52310Os.18572.1.S1_at11/114+30859134..30861473ZIP zinc/iron transport family protein, expressed
LOC_Os04g52320Os.47317.1.S1_at11/114+30870200..30873541expressed protein
LOC_Os04g52330Os.17679.1.S1_at11/114+30876737..30878634expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009617biological_processresponse to bacteria
GO:0009626biological_processhypersensitive response
GO:0018456molecular_functionaryl-alcohol dehydrogenase activity
GO:0046029molecular_functionmannitol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32904.1.S1_at--463--10451Chr04:30854119..30854143 (25 bp)
TTACCTGGCACTCTTGAAGCCCAAG
LOC_Os04g52280
Os.32904.1.S1_at--834--6371Chr04:30854185..30854209 (25 bp)
GATCCCAACCTTCGCTTTGGTTGGA
LOC_Os04g52280
Os.32904.1.S1_at--248--3231Chr04:30854316..30854340 (25 bp)
CAAGATACTAGCTGGGAGCTGCATG
LOC_Os04g52280
Os.32904.1.S1_at--825--2851Chr04:30854455..30854479 (25 bp)
AAGGGCGACGTCAGGTACCGCTTCG
LOC_Os04g52280
Os.32904.1.S1_at--683--491Chr04:30854488..30854512 (25 bp)
ATCGGCAACACCCTCAGGTCGGATT
LOC_Os04g52280
Os.32904.1.S1_at--215--7811Chr04:30854504..30854528 (25 bp)
GGTCGGATTGACTAGGGAGCTCACT
LOC_Os04g52280
Os.32904.1.S1_at--54--5711Chr04:30854513..30854537 (25 bp)
GACTAGGGAGCTCACTGTCACTGGT
LOC_Os04g52280
Os.32904.1.S1_at--121--9671Chr04:30854539..30854563 (25 bp)
TCAGCTCTGTAGCATACCGGACCTG
LOC_Os04g52280
Os.32904.1.S1_at--446--1191Chr04:30854575..30854599 (25 bp)
AGTAGTGCAATCTTCTTGCTACAAG
LOC_Os04g52280
Os.32904.1.S1_at--62--2091Chr04:30854604..30854628 (25 bp)
ACATATCACCTCTACTTGGTGTCAA
LOC_Os04g52280
Os.32904.1.S1_at--1009--9991Chr04:30854676..30854700 (25 bp)
TAGCGTTGCAACACACATGTATATT
LOC_Os04g52280
Target Sequence 
TTACCTGGCACTCTTGAAGCCCAAGGGCAAGATGATCTTGGTTGNCCTGCCTGAGAAGCCTCTCCAGATCCCAACCTTCG
CTTTGGTTGGAGGGGGNCAAGATACTAGCTGGGAGCTGCATGGGGAGCATCAGTGAAACGCAGGAGATGATCGACTTCGC
CGCCGAGCACGGGGTGGCCGCCGACATCGAGCTGATCGGCGCCGACGAGGTGAACACGGCCATGGAGCGCCTCGCCAAGG
GCGACGTCAGGTACCGCTTCGTCGTCGACATCGGCAACACCCTCAGGTCGGATTGACTAGGGAGCTCACTGTCACTGGTN
TCAGCTCTGTAGCATACCGGACCTGCAATCCTGCAAAGTAGTGCAATCTTCTTGCTACAAGACATACATATCACCTCTAC
TTGGTGTCAATAAATGTAGCAAAAGNGGTACATTGTTGTACTAATCTNTGTTTNATATAGCGTTGCAACACACATGTATA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis