Browse Element(s) Details


Os.33019.1.S1_at

Description gb:AK102064.1
DB_XREF= gi:32987273
TID=Os.33019.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082E20, full insert sequence.
FL= gb:AK102064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4070011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40650Os.54633.1.S1_at11/115+23756204..23759277cation/hydrogen exchanger, putative, expressed
LOC_Os05g40660Os.38751.1.A1_at5/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.1198.1.S1_at2/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.8338.1.S1_x_at1/115+23761324..23766044hypothetical protein
LOC_Os05g40670OsAffx.29607.5.S1_x_at9/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40670OsAffx.29607.3.S1_x_at6/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40670Os.37083.2.S1_at1/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40680OsAffx.29607.1.S1_x_at8/115+23769647..23773964hypothetical protein
LOC_Os05g40680OsAffx.29607.2.S1_s_at5/115+23769647..23773964hypothetical protein
LOC_Os05g40690OsAffx.15048.1.S1_at10/115+23776180..23778569hypothetical protein
LOC_Os05g40690OsAffx.29536.4.S1_x_at2/115+23776180..23778569hypothetical protein
LOC_Os05g40700Os.33019.1.S1_at11/115+23782547..23786320expressed protein
LOC_Os05g40710NANA5+23788310..23789791GRAS family transcription factor containing protein
LOC_Os05g40720OsAffx.15049.1.S1_at10/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40720Os.55837.1.S1_x_at1/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40730NANA5+23795611..23798327hypothetical protein
LOC_Os05g40740OsAffx.27264.1.S1_s_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40740OsAffx.27264.1.S1_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40750Os.37083.2.S1_at2/115+23804950..23806506retrotransposon protein, putative, unclassified
LOC_Os05g40760OsAffx.22940.1.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.3.S1_x_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.18.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.3.S1_x_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.31552.2.S1_at1/115+23807432..23813316Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33019.1.S1_at--481--2931Chr05:23785109..23785133 (25 bp)
AAGGACACGTGTACATCCTCATGGT
LOC_Os05g40700
Os.33019.1.S1_at--328--9631Chr05:23785127..23785151 (25 bp)
TCATGGTCCTCATCACTGAAGCAAC
LOC_Os05g40700
Os.33019.1.S1_at--675--6971Chr05:23785272..23785296 (25 bp)
GTACCTTGATCTTGCAGGCCGGAAG
LOC_Os05g40700
Os.33019.1.S1_at--1007--951Chr05:23785295..23785319 (25 bp)
AGGACTCCAAGCTTTACCTGTACAA
LOC_Os05g40700
Os.33019.1.S1_at--621--10711Chr05:23785772..23785796 (25 bp)
TTGCTCGCGTCATACTGTTCGTATA
LOC_Os05g40700
Os.33019.1.S1_at--179--10631Chr05:23785789..23785813 (25 bp)
TTCGTATACTTCTTCGCTCATGTGT
LOC_Os05g40700
Os.33019.1.S1_at--608--731Chr05:23785808..23785832 (25 bp)
ATGTGTACCTTCACTTCGACCAGGT
LOC_Os05g40700
Os.33019.1.S1_at--132--10651Chr05:23785936..23785960 (25 bp)
TTCCCGCTAGGGTTCTACAGTATGA
LOC_Os05g40700
Os.33019.1.S1_at--443--6031Chr05:23786091..23786115 (25 bp)
GAGATGCAACGCTGTCTGGAAGCCA
LOC_Os05g40700
Os.33019.1.S1_at--643--1711Chr05:23786181..23786205 (25 bp)
ACCACTCGTGCGTACAAAATCTGTT
LOC_Os05g40700
Os.33019.1.S1_at--512--271Chr05:23786218..23786242 (25 bp)
ATATGTCCCACACTCTTTTTCTTTG
LOC_Os05g40700
Target Sequence 
AAGGACACGTGTACATCCTCATGGTCCTCATCACTGAAGCAACCACACCCTTCGTGAACCTCAGATGGTACCTTGATCTT
GCAGGCCGGAAGGACTCCAAGCTTTACCTGTACAACGGGGTGGCACTGTTTGCTGGATGGCTGGTTGCTCGCGTCATACT
GTTCGTATACTTCTTCGCTCATGTGTACCTTCACTTCGACCAGGTGAGGACGGTGTTCCCGCTAGGGTTCTACAGTATGA
TGGCGGTGCCGCCGGCGATGTCGGCGATGAACCTCCTCTGGTTCCGGAAGATCTGCAAGGGGATGGTCAAGGCCATGTCC
AGCGCCAACCGAAGTCAATGCGTCAAGACAGATTAGGACTTGGGTAAAAGGAGATGCAACGCTGTCTGGAAGCCAAATGC
TTANNANNTTGCTTGTTTGATGATTAANTAAACTGTAATCAATCAATTNANNANTTGAAAACCACTCGTGCGTACAAAAT
CTGTTACTTAAGAGTAGATATGTCCCACACTCTTTTTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis