Browse Element(s) Details


Os.33073.1.S2_s_at

Description gb:CB634440
DB_XREF= gi:29629431
DB_XREF=OSIIEb13P09.r
CLONE=OSIIEb13P09
TID=Os.33073.1
CNT=7
FEA=FLmRNA
TIER=ConsEnd
STK=2
UG=Os.33073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myosin heavy chain (B1142C05.32), mRNA
FL= gb:AK101864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5163011/11Myosin head family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51610Os.8988.1.S1_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51610Os.8988.2.S1_x_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51620Os.13981.1.S1_at1/111+29972714..29975884Ribosomal RNA assembly protein mis3, putative
LOC_Os01g51630Os.33073.1.S2_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.33073.1.S1_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.50543.1.S1_x_at1/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51640Os.13766.1.S1_at11/111+30005938..30009857expressed protein
LOC_Os01g51650OsAffx.21543.1.S1_at11/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51650OsAffx.655.1.S1_x_at2/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51660OsAffx.11563.1.S1_at10/111+30022688..30023250hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0016459cellular_componentmyosin
GO:0016461cellular_componentunconventional myosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33073.1.S2_s_at--138--9711Chr01:29980076..29980100 (25 bp)
TCACAACCTTTTCCATACTGCTAGA
LOC_Os01g51630
Os.33073.1.S2_s_at--667--6292Chr01:19438285..19438304 (20 bp)
GATGATTCATGCATACCTTTTTCAC
NONE
Os.33073.1.S2_s_at--339--6291Chr01:29979879..29979903 (25 bp)
GATGATTTGCTACCTTTTGTTCGTG
LOC_Os01g51630
Os.33073.1.S2_s_at--764--4171Chr01:29979850..29979874 (25 bp)
CCCAAGCTTTGCGTTTTTATTGCAA
LOC_Os01g51630
Os.33073.1.S2_s_at--562--2131Chr01:29979818..29979842 (25 bp)
ACAGTTAACTTTTCTCACCATGGAG
LOC_Os01g51630
Os.33073.1.S2_s_at--652--7711Chr01:29979749..29979773 (25 bp)
GGGTGTACAGTTCGCATAATTCATT
LOC_Os01g51630
Os.33073.1.S2_s_at--496--10371Chr01:29979725..29979749 (25 bp)
TTTTATACCAGATAGCAGGCCATTG
LOC_Os01g51630
Os.33073.1.S2_s_at--986--211Chr01:29979636..29979660 (25 bp)
ATTTGTGTTCACTTTTTCCTTGCAT
LOC_Os01g51630
Os.33073.1.S2_s_at--703--5191Chr01:29979602..29979626 (25 bp)
GCAATTCTTTTTGGGCTTGTATACT
LOC_Os01g51630
Os.33073.1.S2_s_at--681--7591Chr01:29979566..29979590 (25 bp)
GGGCAAAACGCCTTTGTGTAAGCAT
LOC_Os01g51630
Os.33073.1.S2_s_at--513--531Chr01:29979474..29979498 (25 bp)
ATCGCATCGCTCTGCTGGTATAGAA
LOC_Os01g51630
Target Sequence 
TCACAACCTTTTCCATACTGCTAGATGATGATTCATGCATACCTTTTTCACTTGATGATATTGCAAAGACAATGCCAATC
ATTGAGGTGGCTGAAGATGATTTGCTACCTTTTGTTCGTGAAAACCCAAGCTTTGCGTTTTTATTGCAAAGGGGGAACAG
TTAACTTTTCTCACCATGGAGCTTTGCAAGTTGTGGATAAATCAGTTGTTCCTATCCGTAGGATAGGGTGTACAGTTCGC
ATAATTCATTTTTATACCAGATAGCAGGCCATTGAAGAGTAGATTGCTAGGGGAGGTTATAGGTTTCTGATTTTTATTGA
TTGGTTCGTTGGTTGTATATTTGTGTTCACTTTTTCCTTGCATTGTTTCTTTGCAATTCTTTTTGGGCTTGTATACTAAG
GGGCCAAGGGGCAAAACGCCTTTGTGTAAGCATAGAGCTTAGGAGGTTTTGCTGTAATTAGTGAAGCTGTACATGTGTTG
TAAATGATTAAAGAAAATGAATCGCATCGCTCTGCTGGTATAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33073.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis