Browse Element(s) Details


Os.8988.2.S1_x_at

Description gb:NM_191730.1
DB_XREF= gi:34910543
GEN=B1142C05.29
TID=Os.8988.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8988 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1142C05.29 (B1142C05.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1142C05.29 (B1142C05.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5161011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein
LOC_Os01g51560NANA1+29943858..29944301hypothetical protein
LOC_Os01g51570Os.4159.1.S1_at11/111+29947803..29949168Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g51580OsAffx.23749.1.S1_at11/111+29949261..29949839hypothetical protein
LOC_Os01g51590OsAffx.17040.2.S1_x_at1/111+29951331..29952332hypothetical protein
LOC_Os01g51610Os.8988.1.S1_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51610Os.8988.2.S1_x_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51620Os.13981.1.S1_at1/111+29972714..29975884Ribosomal RNA assembly protein mis3, putative
LOC_Os01g51630Os.33073.1.S2_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.33073.1.S1_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.50543.1.S1_x_at1/111+29979439..30002205Myosin head family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009657biological_processplastid organization and biogenesis
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0009790biological_processembryonic development
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010116biological_processpositive regulation of abscisic acid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0017163molecular_functionnegative regulator of basal transcription activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8988.2.S1_x_at--908--7091Chr01:29968978..29969002 (25 bp)
GTCAGAACCCATGATCTTCAACTAG
LOC_Os01g51610
Os.8988.2.S1_x_at--1108--8051Chr01:29969002..29969138 (25 bp)
GGAGACTCCATTGTCATCGGAGCAA
LOC_Os01g51610
Os.8988.2.S1_x_at--831--7751Chr01:29969147..29969171 (25 bp)
GGTGATCAACAAGCTGCCACTGTGC
LOC_Os01g51610
Os.8988.2.S1_x_at--830--10651Chr01:29969201..29969225 (25 bp)
TTCCCCATTTTTCCAATTGCACAAG
LOC_Os01g51610
Os.8988.2.S1_x_at--93--2831Chr01:29969256..29969280 (25 bp)
AAGTTGATATCTCTGCCTTCGTGCC
LOC_Os01g51610
Os.8988.2.S1_x_at--754--4311Chr01:29969271..29969295 (25 bp)
CCTTCGTGCCACATGCTGATGAGAA
LOC_Os01g51610
Os.8988.2.S1_x_at--236--8951Chr01:29969308..29969332 (25 bp)
TGACGGGATACTGAATTCTCTGCCA
LOC_Os01g51610
Os.8988.2.S1_x_at--936--8671Chr01:29969350..29969374 (25 bp)
TGTGAGGTATTCTGACTTCTTCGAC
LOC_Os01g51610
Os.8988.2.S1_x_at--199--851Chr01:29969390..29969414 (25 bp)
ATGGACATGGCAAACACTCTGAACG
LOC_Os01g51610
Os.8988.2.S1_x_at--117--1151Chr01:29969427..29969451 (25 bp)
AGTCTGCTAGTCTGCATGTCACTGA
LOC_Os01g51610
Os.8988.2.S1_x_at--227--6291Chr01:29969450..29969474 (25 bp)
GATGATAAGTCTGGGCATTCCTTGA
LOC_Os01g51610
Target Sequence 
GTCAGAACCCATGATCTTCAACTAGGAGACTCCATTGTCATCGGAGCAAAGAAGGCAGGTGATCAACAAGCTGCCACTGT
GCCACAAGTTGACGAGCATATCTCTACCCTCTTCCCCATTTTTCCAATTGCACAAGTCGATGACTATCTCTCTCCCATGG
CACCACAAGTTGATATCTCTGCCTTCGTGCCACATGCTGATGAGAACCATGAGATATTTGACGGGATACTGAATTCTCTG
CCAGAGATACCAGTAGCCAATGTGAGGTATTCTGACTTCTTCGACCCATTCGATGATGGTATGGACATGGCAAACACTCT
GAACGCCAACGCCAACCAGTCTGCTAGTCTGCATGTCACTGATGATAAGTCTGGGCATTCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8988.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis