Browse Element(s) Details


OsAffx.9358.3.S1_at

Description tigr:9629.m04995
TID=OsAffx.9358.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5155010/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein
LOC_Os01g51500OsAffx.9361.1.S1_at11/111+29919562..29920194hypothetical protein
LOC_Os01g51510OsAffx.23746.1.S1_s_at11/111+29920574..29921173hypothetical protein
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein
LOC_Os01g51560NANA1+29943858..29944301hypothetical protein
LOC_Os01g51570Os.4159.1.S1_at11/111+29947803..29949168Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g51580OsAffx.23749.1.S1_at11/111+29949261..29949839hypothetical protein
LOC_Os01g51590OsAffx.17040.2.S1_x_at1/111+29951331..29952332hypothetical protein
LOC_Os01g51610Os.8988.1.S1_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51610Os.8988.2.S1_x_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9358.3.S1_at--269--1611Chr01:29940299..29940323 (25 bp)
AGCTGCTCGGGAAGGCCAACGCCGT
LOC_Os01g51550
OsAffx.9358.3.S1_at--86--4411Chr01:29940332..29940356 (25 bp)
GCCAGGAACGGCATCTTTCGGACCC
LOC_Os01g51550
OsAffx.9358.3.S1_at--121--2171NONE
ACAGCCATTGCTCGTTGGTCTCGTA
NONE
OsAffx.9358.3.S1_at--364--7811Chr01:29941158..29941182 (25 bp)
GGTCTCGTATCTGCGTAAATCTCTC
LOC_Os01g51550
OsAffx.9358.3.S1_at--189--7051Chr01:29941172..29941196 (25 bp)
GTAAATCTCTCTACGCTGGTGCCCA
LOC_Os01g51550
OsAffx.9358.3.S1_at--720--9151Chr01:29941191..29941215 (25 bp)
TGCCCACGTCTTACGGGATCAGTTA
LOC_Os01g51550
OsAffx.9358.3.S1_at--978--771Chr01:29941215..29941239 (25 bp)
ATGTGCCGTATGGTGGAGACTCTCC
LOC_Os01g51550
OsAffx.9358.3.S1_at--418--7731Chr01:29941226..29941250 (25 bp)
GGTGGAGACTCTCCTATGCCGGCAT
LOC_Os01g51550
OsAffx.9358.3.S1_at--247--4591Chr01:29941393..29941417 (25 bp)
GCGCAGGCGCGCAGCTTGAGATCAA
LOC_Os01g51550
OsAffx.9358.3.S1_at--558--1551Chr01:29941405..29941429 (25 bp)
AGCTTGAGATCAACCTGCGGCTGGG
LOC_Os01g51550
OsAffx.9358.3.S1_at--175--10811Chr01:29941446..29941470 (25 bp)
TTGTACGGCTGGGAGCGTTGATTTT
LOC_Os01g51550
Target Sequence 
AGCTGCTCGGGAAGGCCAACGCCGTCAGCCCACGCCAGGAACGGCATCTTTCGGACCCCTTTCCCCGGCACTCAGAAGCC
CGGCGCGCGGCCGGACGCGACGGTGAAGCCCGCTGCGGTAGCATCTCTCCGTGCCGTGCCGGTTGTTGGCGTGCAGTGTG
ACGTTGAAGACAGGGGAGATGGTGGACGCGCCACCAGCGGCGGCGGCCGGCGTGGCGAGACCGCGCACAGCCATTGCTCG
TTGGTCTCGTATCTGCGTAAATCTCTCTACGCTGGTGCCCACGTCTTACGGGATCAGTTATGTGCCGTATGGTGGAGACT
CTCCTATGCCGGCATCCCCCTGGCGTACGGGAGCACTCCCAGCTTCCGGCTTGGGGCGAGGAAGGCTTTGACGGTGGCGG
TGAACGCGATGGGCGAGGGGGCCGGCGTGCCCGACGATCTGCTTCGGCTCATGTCGGCGGAGCGAAGGCTTGGCGTGGCG
CAGGCGCGCAGCTTGAGATCAACCTGCGGCTGGGCTGGCCCGGTTGGGAGTTGTACGGCTGGGAGCGTTGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9358.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis