Browse Element(s) Details


Os.41883.1.S1_at

Description gb:NM_191719.1
DB_XREF= gi:34910521
GEN=B1142C05.18
TID=Os.41883.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41883 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cytidine deaminase (B1142C05.18), mRNA.
PROD=putative cytidine deaminase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5154010/11Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os06g409101/11Cytidine and deoxycytidylate deaminase zinc-binding region family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51450OsAffx.28030.1.S1_s_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.1.S1_x_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.2.S1_x_at4/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51460Os.30797.1.S1_at11/111+29910723..29911423expressed protein
LOC_Os01g51460OsAffx.23746.1.S1_s_at1/111+29910723..29911423expressed protein
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein
LOC_Os01g51500OsAffx.9361.1.S1_at11/111+29919562..29920194hypothetical protein
LOC_Os01g51510OsAffx.23746.1.S1_s_at11/111+29920574..29921173hypothetical protein
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein
LOC_Os01g51560NANA1+29943858..29944301hypothetical protein
LOC_Os01g51570Os.4159.1.S1_at11/111+29947803..29949168Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g51580OsAffx.23749.1.S1_at11/111+29949261..29949839hypothetical protein
LOC_Os01g51590OsAffx.17040.2.S1_x_at1/111+29951331..29952332hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009972biological_processcytidine deamination
GO:0005829cellular_componentcytosol
GO:0004126molecular_functioncytidine deaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41883.1.S1_at--22--7251Chr01:29932641..29932665 (25 bp)
GTCGCCAATGGCTTCGCCCACGGTG
LOC_Os01g51540
Os.41883.1.S1_at--301--3331Chr01:29932623..29932647 (25 bp)
CACGGTGACCTAGAGGCGCGCCTGA
LOC_Os01g51540
Os.41883.1.S1_at--171--4591Chr01:29932569..29932593 (25 bp)
GCGCATGCGCCGTATAGCGAGTGCC
LOC_Os01g51540
Os.41883.1.S1_at--471--4031Chr01:29932559..29932583 (25 bp)
CGTATAGCGAGTGCCCGTCGGGATT
LOC_Os01g51540
Os.41883.1.S1_at--662--9991Chr01:29932555..29932579 (25 bp)
TAGCGAGTGCCCGTCGGGATTCGCC
LOC_Os01g51540
Os.41883.1.S1_at--120--8032Chr06:24387846..24387870 (25 bp)
GGAGTCCGCGGCGTATAATCCGACA
LOC_Os06g40910
Os.41883.1.S1_at--706--6791Chr01:29932477..29932501 (25 bp)
GTATAATCCGACACTAGGCCCCGTG
LOC_Os01g51540
Os.41883.1.S1_at--772--9351Chr01:29932359..29932383 (25 bp)
TCGCAGGAAGCGACGGCCAGGATCT
LOC_Os01g51540
Os.41883.1.S1_at--826--5391Chr01:29932353..29932377 (25 bp)
GAAGCGACGGCCAGGATCTTCCTGG
LOC_Os01g51540
Os.41883.1.S1_at--340--1891Chr01:29932301..29932325 (25 bp)
ACGTGTACAATTATACACCGTCCGA
LOC_Os01g51540
Os.41883.1.S1_at--211--7871NONE
GGTTTGGGAACGAGATATGTTCATA
NONE
Target Sequence 
GTCGCCAATGGCTTCGCCCACGGTGACCTAGAGGCGCGCCTGAGGGAGGCAGCGGAGGCGGCCGCGCGGGCGGCGCATGC
GCCGTATAGCGAGTGCCCGTCGGGATTCGCCGTGGCGGACGGCGAAGGGAAGGTGTACNCCGGAGGATGCCTGGAGTCCG
CGGCGTATAATCCGACACTAGGCCCCGTGCAGGCGGCCATCATAGGGATGGTGGCCGCCGGGGGCGNCGCCGCCGGAGAC
GTGGTGGCGGCGGCGCTCGTGGAGAAGGAAGCGGGGTTGGTGTCGCAGGAAGCGACGGCCAGGATCTTCCTGGCCGCNGT
GGCCCCACAGGCCACNTTCCACGTGTACAATTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTG
GGGANGGAGTTGTAGGAGGTNAGGTTTGGGAACGAGATATGTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis