Browse Element(s) Details


OsAffx.23745.1.S1_at

Description tigr:9629.m04987
TID=OsAffx.23745.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g514709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51410Os.26642.1.S1_a_at11/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51410OsAffx.23425.1.S1_at1/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51420OsAffx.11559.1.S1_at11/111+29895394..29898137Calcineurin B-like protein 10, putative, expressed
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein
LOC_Os01g51440OsAffx.21546.1.S1_s_at3/111+29905381..29905830hypothetical protein
LOC_Os01g51450OsAffx.28030.1.S1_s_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.1.S1_x_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.2.S1_x_at4/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51460Os.30797.1.S1_at11/111+29910723..29911423expressed protein
LOC_Os01g51460OsAffx.23746.1.S1_s_at1/111+29910723..29911423expressed protein
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein
LOC_Os01g51500OsAffx.9361.1.S1_at11/111+29919562..29920194hypothetical protein
LOC_Os01g51510OsAffx.23746.1.S1_s_at11/111+29920574..29921173hypothetical protein
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23745.1.S1_at--740--7731Chr01:29913273..29913297 (25 bp)
GGTGTCGTCGACGTATGTAAACCGA
NONE
OsAffx.23745.1.S1_at--247--7051Chr01:29913257..29913281 (25 bp)
GTAAACCGACTCTAGGCTACAAGCT
NONE
OsAffx.23745.1.S1_at--638--10651Chr01:29913215..29913239 (25 bp)
TTCCCTTCATCTACATGCTGTTTTT
LOC_Os01g51470
OsAffx.23745.1.S1_at--271--10572Chr04:18786651..18786672 (22 bp)
TTCTTCTCTGTTTTTCTTGTCATGC
NONE
OsAffx.23745.1.S1_at--726--10371Chr01:29913181..29913205 (25 bp)
TTTTCTTGTCATGCGGATAACCTAC
LOC_Os01g51470
OsAffx.23745.1.S1_at--609--7951Chr01:29913167..29913191 (25 bp)
GGATAACCTACAAGGCCAGCCAAGC
LOC_Os01g51470
OsAffx.23745.1.S1_at--1146--1691Chr01:29913150..29913174 (25 bp)
AGCCAAGCAATCGACACCGCTGTTA
LOC_Os01g51470
OsAffx.23745.1.S1_at--259--5631Chr01:29913138..29913162 (25 bp)
GACACCGCTGTTATCTTCAACAAGC
LOC_Os01g51470
OsAffx.23745.1.S1_at--253--2651Chr01:29913117..29913141 (25 bp)
AAGCCAATCAGTAGCTCGGTCGAGC
LOC_Os01g51470
OsAffx.23745.1.S1_at--93--4871Chr01:29912812..29912836 (25 bp)
GCTAGGCGTGGCTCAGCTGGATATT
LOC_Os01g51470
OsAffx.23745.1.S1_at--254--231Chr01:29912792..29912816 (25 bp)
ATATTGGTTTGCAGCTGGGCTGGCC
LOC_Os01g51470
Target Sequence 
GGTGTCGTCGACGTATGTAAACCGACTCTAGGCTACAAGCTAGCCATGGCGCTTCTGCTTCCCTTCATCTACATGCTGTT
TTTCTTCTCTGTTTTTCTTGTCATGCGGATAACCTACAAGGCCAGCCAAGCAATCGACACCGCTGTTATCTTCAACAAGC
CAATCAGTAGCTCGGTCGAGCTCGTCGGCGTCAGGGGGCTGGATCCATCTCTGGCCCCAGGAGCGGCGGCATCGCCGGCT
TTCGATCTACTCCTGCGTCTCGACAACGGGGACGCCTGCGGCGACCAGTACCGAGAGGGCGGCAGCGTCAAGGTCTCCTA
CGCCGGCGTCCCCCTGGCGCACGGGAGCACCCCTGGCTTCCGCTTGGGGGCGAGGAGTTCCGCGACGGTGGCGGTGAACG
CGACGAGCGATGGGGTGGGTGTGCCGGAGGAGCTGTTCCGGCTCATGTCGGCGGAGCAAAGGCTAGGCGTGGCTCAGCTG
GATATTGGTTTGCAGCTGGGCTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis