Browse Element(s) Details


OsAffx.9361.1.S1_at

Description tigr:9629.m04990
TID=OsAffx.9361.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5150011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51420OsAffx.11559.1.S1_at11/111+29895394..29898137Calcineurin B-like protein 10, putative, expressed
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein
LOC_Os01g51440OsAffx.21546.1.S1_s_at3/111+29905381..29905830hypothetical protein
LOC_Os01g51450OsAffx.28030.1.S1_s_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.1.S1_x_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.2.S1_x_at4/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51460Os.30797.1.S1_at11/111+29910723..29911423expressed protein
LOC_Os01g51460OsAffx.23746.1.S1_s_at1/111+29910723..29911423expressed protein
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein
LOC_Os01g51500OsAffx.9361.1.S1_at11/111+29919562..29920194hypothetical protein
LOC_Os01g51510OsAffx.23746.1.S1_s_at11/111+29920574..29921173hypothetical protein
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein
LOC_Os01g51560NANA1+29943858..29944301hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9361.1.S1_at--236--3531Chr01:29920106..29920130 (25 bp)
CATCCAGGCGTGAGATGCTCAAGGT
LOC_Os01g51500
OsAffx.9361.1.S1_at--566--631Chr01:29920092..29920116 (25 bp)
ATGCTCAAGGTCTTGTACGTCCTGC
LOC_Os01g51500
OsAffx.9361.1.S1_at--453--3771Chr01:29920057..29920081 (25 bp)
CTCGACACCGTTTTTGTACTACATC
LOC_Os01g51500
OsAffx.9361.1.S1_at--1100--4011Chr01:29920049..29920073 (25 bp)
CGTTTTTGTACTACATCTTCTTCGA
LOC_Os01g51500
OsAffx.9361.1.S1_at--370--3971Chr01:29919869..29919893 (25 bp)
CGGTGGTGCGTTACGCCGGCTTCAC
LOC_Os01g51500
OsAffx.9361.1.S1_at--982--8931Chr01:29919761..29919785 (25 bp)
TGACGCTGCCCAATGAGGTACACGA
LOC_Os01g51500
OsAffx.9361.1.S1_at--413--2991Chr01:29919750..29919774 (25 bp)
AATGAGGTACACGATCGCATGGCGG
LOC_Os01g51500
OsAffx.9361.1.S1_at--295--1591Chr01:29919701..29919725 (25 bp)
AGCTCGAGGTCGACGTGAAGTTGTT
LOC_Os01g51500
OsAffx.9361.1.S1_at--707--5751Chr01:29919690..29919714 (25 bp)
GACGTGAAGTTGTTCGACCGCGAGA
LOC_Os01g51500
OsAffx.9361.1.S1_at--788--7331Chr01:29919598..29919622 (25 bp)
GTGCAGAGTGTTCGCTACCCAGAAT
LOC_Os01g51500
OsAffx.9361.1.S1_at--390--6111Chr01:29919593..29919617 (25 bp)
GAGTGTTCGCTACCCAGAATTGGGC
LOC_Os01g51500
Target Sequence 
CATCCAGGCGTGAGATGCTCAAGGTCTTGTACGTCCTGCTCGCTCTGGCCTCGACACCGTTTTTGTACTACATCTTCTTC
GACCTCCCTCCCAAGTTCTCCCTCCAGATCAACAGCGCCGAGGGCCTCGACGCGGTGGCGGCGGCAGCGGCGGCGCAGCC
CCTCTCCACCATCGTCAACATGACCCTGCACGCCAGCAACCGGCGCGCGCCGGGCCGATGCTACCGCCACGGCGAGGCGG
TGGTGCGTTACGCCGGCTTCACCGTCGCGGCGGGCCGGACGCGCGTCTTCTGCGTCGGCGCCAGGGACGCGCTCGACGTG
CCGGTCGTGGCGTGGGCGGACGGCGTGACGCTGCCCAATGAGGTACACGATCGCATGGCGGCGGAGCAGCGCGCCTGCTC
CGTGGAGCTCGAGGTCGACGTGAAGTTGTTCGACCGCGAGAGCGAGATGCCGACGTGGATGTGGTGCAAGGTGACGACGC
AGGAAGCGGAGCCGTCAGACGTGNNNNNGTGCAGAGTGTTCGCTACCCAGAATTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis