Browse Element(s) Details


Os.48273.1.A1_s_at

Description gb:CR280181
DB_XREF= gi:44666747
DB_XREF=CR280181
CLONE=p698d08p5
TID=Os.48273.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48273 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_194688.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g515304/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein
LOC_Os01g51440OsAffx.21546.1.S1_s_at3/111+29905381..29905830hypothetical protein
LOC_Os01g51450OsAffx.28030.1.S1_s_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.1.S1_x_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.2.S1_x_at4/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51460Os.30797.1.S1_at11/111+29910723..29911423expressed protein
LOC_Os01g51460OsAffx.23746.1.S1_s_at1/111+29910723..29911423expressed protein
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein
LOC_Os01g51500OsAffx.9361.1.S1_at11/111+29919562..29920194hypothetical protein
LOC_Os01g51510OsAffx.23746.1.S1_s_at11/111+29920574..29921173hypothetical protein
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein
LOC_Os01g51560NANA1+29943858..29944301hypothetical protein
LOC_Os01g51570Os.4159.1.S1_at11/111+29947803..29949168Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g51580OsAffx.23749.1.S1_at11/111+29949261..29949839hypothetical protein
LOC_Os01g51590OsAffx.17040.2.S1_x_at1/111+29951331..29952332hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48273.1.A1_s_at--1127--7331Chr01:29926858..29926882 (25 bp)
GTGCAAGACCTCAATGTGAACCCGA
LOC_Os01g51530
Os.48273.1.A1_s_at--850--5431NONE
GAACCCGAAGCTTCCTTTCGAGGAT
NONE
Os.48273.1.A1_s_at--544--9891NONE
TACTTAAACCGAGTGGATTGGCCAT
NONE
Os.48273.1.A1_s_at--71--711Chr01:29926411..29926432 (22 bp)
ATGAGTTTTTCAAATCGCTGCTTTT
LOC_Os01g51530
Os.48273.1.A1_s_at--390--10111NONE
TATGGACGTCAACCGGTGATGCTGA
NONE
Os.48273.1.A1_s_at--1081--8851Chr01:29926352..29926376 (25 bp)
TGATGCTGATCACGCTTGGATAGTT
LOC_Os01g51530
Os.48273.1.A1_s_at--1090--6531NONE
GATTTTGAATCTCCTGAGGCTATTG
NONE
Os.48273.1.A1_s_at--999--411Chr01:29925640..29926036 (25 bp)
ATCTCCTAATCCTGGACGACGAACA
NONE
Os.48273.1.A1_s_at--650--4231Chr01:29925987..29926011 (25 bp)
CCGATGTATGTTGTCCAGTCCAGAA
LOC_Os01g51530
Os.48273.1.A1_s_at--754--6231NONE
GATGGCTATTTTTCTACTGGTCACT
NONE
Os.48273.1.A1_s_at--851--10131NONE
TATGCAGACAGATCTGGCAGTCTCC
NONE
Target Sequence 
GTGCAAGACCTCAATGTGAACCCGAAGCTTCCTTTCGAGGATAACACATTTGATGTTATAACCAACGTGGAAATGAGACG
AATACTTAAACCGAGTGGATTGGCCATAATGAGTTTTTCAAATCGCTGCTTTTGGACAAAGGCTATATCTATATGGACGT
CAACCGGTGATGCTGATCACGCTTGGATAGTTGGGGCTTACTTCCATTATGCTGGAGATTTTGAATCTCCTGAGGCTATT
GATATATCTCCTAATCCTGGACGACGAACAGACCCGATGTATGTTGTCCAGTCCAGAAAGAGAATAGCTTGATTAATATC
ATAGGTTCTATACAGATTTTGTGTAATGCACAACGTGATGGCTATTTTTCTACTGGTCACTTTCGAAACGTAAATATGCA
GACAGATCTGGCAGTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48273.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis