Browse Element(s) Details


Os.4159.1.S1_at

Description gb:AF030167.1
DB_XREF= gi:2623812
TID=Os.4159.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.4159 (NCBI UniGene Cluster)
DEF=Oryza sativa glucanase mRNA, complete cds.
PROD=glucanase
FL= gb:AF030167.1 gb:AB027429.1 gb:AK104472.1 gb:AK060113.1 gb:AK060862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5157011/11Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein
LOC_Os01g51560NANA1+29943858..29944301hypothetical protein
LOC_Os01g51570Os.4159.1.S1_at11/111+29947803..29949168Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g51580OsAffx.23749.1.S1_at11/111+29949261..29949839hypothetical protein
LOC_Os01g51590OsAffx.17040.2.S1_x_at1/111+29951331..29952332hypothetical protein
LOC_Os01g51610Os.8988.1.S1_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51610Os.8988.2.S1_x_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51620Os.13981.1.S1_at1/111+29972714..29975884Ribosomal RNA assembly protein mis3, putative

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4159.1.S1_at--514--10251Chr01:29948590..29948614 (25 bp)
TTCGCCTACAAAGACGACCAGGAAA
LOC_Os01g51570
Os.4159.1.S1_at--568--5951Chr01:29948743..29948767 (25 bp)
GAGAAGGCCGGCACACCGAGCGTCA
LOC_Os01g51570
Os.4159.1.S1_at--2--8331Chr01:29948852..29948876 (25 bp)
GGCTGATCAACCATGTCCGAGGCGG
LOC_Os01g51570
Os.4159.1.S1_at--960--3571Chr01:29948910..29948934 (25 bp)
CATATTTGCTATGTTCGACGAGAAC
LOC_Os01g51570
Os.4159.1.S1_at--971--9371Chr01:29948954..29948978 (25 bp)
TCGAGAAGCACTTTGGGCTGTTCAA
LOC_Os01g51570
Os.4159.1.S1_at--63--10511Chr01:29948974..29948998 (25 bp)
TTCAACCCCAATAAGTCGCCATCGT
LOC_Os01g51570
Os.4159.1.S1_at--508--1151Chr01:29948987..29949011 (25 bp)
AGTCGCCATCGTACAGCATTAGTTT
LOC_Os01g51570
Os.4159.1.S1_at--134--9791Chr01:29949053..29949077 (25 bp)
TAAGTTGCTCCCGTGATAGGCCAAA
LOC_Os01g51570
Os.4159.1.S1_at--384--10071Chr01:29949069..29949093 (25 bp)
TAGGCCAAACGCAAGCATGGGAAGC
LOC_Os01g51570
Os.4159.1.S1_at--567--2711Chr01:29949094..29949118 (25 bp)
AAGCATAGTGCCGTGTGGTGTCCAT
LOC_Os01g51570
Os.4159.1.S1_at--131--651Chr01:29949117..29949141 (25 bp)
ATGCATCTTTCCCAATTTGTGAAAT
LOC_Os01g51570
Target Sequence 
TTCGCCTACAAAGACGACCAGGAAAGCGGGCAGAAAAACATCATGCTNCAACTACGCCACCTTCCAGCCGGGCACGACGG
TGGTGGACAACGGGAACAGGCTGACCTACACGTGCCTCTTCGACGCGATGGTCGACTCCATCTACGCCGCGCTGGAGAAG
GCCGGCACACCGAGCGTCAGCGTCGTCGTGTCCGAGAGCGGGTGGCCGTCCGCCGGAGGGAAGGTTGGGGCCAGCGTGAA
CAACGCGCAGACATACAACCAGGGGCTGATCAACCATGTCCGAGGCGGCACGCCCAAGAAGCGCAGGGCGTTGGAGACTT
ACATATTTGCTATGTTCGACGAGAACGGCAAGCCTGGGGATGAGATCGAGAAGCACTTTGGGCTGTTCAACCCCAATAAG
TCGCCATCGTACAGCATTAGTTTCTAAGGGGATCGTACAGACTGATATATATTTTTATATGGAATAAGTTGCTCCCGTGA
TAGGCCAAACGCAAGCATGGGAAGCAAGCATAGTGCCGTGTGGTGTCCATGCATCTTTCCCAATTTGTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis