Browse Element(s) Details


OsAffx.23749.1.S1_at

Description gb:NM_191725.1
DB_XREF= gi:34910533
GEN=B1142C05.24
TID=OsAffx.23749.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1142C05.24 (B1142C05.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5158011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein
LOC_Os01g51560NANA1+29943858..29944301hypothetical protein
LOC_Os01g51570Os.4159.1.S1_at11/111+29947803..29949168Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g51580OsAffx.23749.1.S1_at11/111+29949261..29949839hypothetical protein
LOC_Os01g51590OsAffx.17040.2.S1_x_at1/111+29951331..29952332hypothetical protein
LOC_Os01g51610Os.8988.1.S1_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51610Os.8988.2.S1_x_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51620Os.13981.1.S1_at1/111+29972714..29975884Ribosomal RNA assembly protein mis3, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23749.1.S1_at--232--1351Chr01:29949734..29949758 (25 bp)
AGACGCGCGTCCCAAAAGACGACCG
LOC_Os01g51580
OsAffx.23749.1.S1_at--237--2331Chr01:29949720..29949744 (25 bp)
AAAGACGACCGATCGCGATGGCGTA
LOC_Os01g51580
OsAffx.23749.1.S1_at--143--9331Chr01:29949708..29949732 (25 bp)
TCGCGATGGCGTACGTGACGGCAAT
LOC_Os01g51580
OsAffx.23749.1.S1_at--306--2971Chr01:29949686..29949710 (25 bp)
AATGGCAGCGGCACCATGCATGGCG
LOC_Os01g51580
OsAffx.23749.1.S1_at--848--2851Chr01:29949640..29949664 (25 bp)
AAGTGACCACGATCACCATGGATCT
LOC_Os01g51580
OsAffx.23749.1.S1_at--476--10631Chr01:29949608..29949632 (25 bp)
TTCGACGCCGCAGACGGGCTGGATA
LOC_Os01g51580
OsAffx.23749.1.S1_at--581--3991Chr01:29949594..29949618 (25 bp)
CGGGCTGGATACATGGACGCGAAAA
LOC_Os01g51580
OsAffx.23749.1.S1_at--289--5791Chr01:29949579..29949603 (25 bp)
GACGCGAAAACGGTTGTCGGGCACA
LOC_Os01g51580
OsAffx.23749.1.S1_at--199--6151Chr01:29949475..29949499 (25 bp)
GAGGTGGCGGTCTACTACTCCGGCA
LOC_Os01g51580
OsAffx.23749.1.S1_at--394--7191Chr01:29949347..29949371 (25 bp)
GTCGGCTTACCGGAGGATCTACGCG
LOC_Os01g51580
OsAffx.23749.1.S1_at--385--3931Chr01:29949319..29949343 (25 bp)
CGGCGCCTCACGTGAAGAACGGAAC
LOC_Os01g51580
Target Sequence 
AGACGCGCGTCCCAAAAGACGACCGATCGCGATGGCGTACGTGACGGCAATGGCAGCGGCACCATGCATGGCGCTGGTCT
CTCCGACGGGGAGAAAGTGACCACGATCACCATGGATCTCGCCTCCTTCGACGCCGCAGACGGGCTGGATACATGGACGC
GAAAACGGTTGTCGGGCACACGGTTTCGCCCGCGTTTAACCTCGCGGTGCGCGTCGAGAACCCACGCGCTACTTCCGGCG
GTGGTGCGCCAACAGCGGGGAGGTGGCGGTCTACTACTCCGGCAGTCCGGCGTGGCGCTCGCGTGGGGGAAAAGTGCCGG
GGTTCTGCGCGCGGAGGAGGTCGGCAGCGGAGTTCACGGTAGTGCCGTGGTGCAGGGCCGCAGGGGAGTCGGCTTACCGG
AGGATCTACGCGCGCCGGCGCCTCACGTGAAGAACGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis