Browse Element(s) Details


OsAffx.9359.1.S1_at

Description tigr:9629.m04992
TID=OsAffx.9359.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g515209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein
LOC_Os01g51440OsAffx.21546.1.S1_s_at3/111+29905381..29905830hypothetical protein
LOC_Os01g51450OsAffx.28030.1.S1_s_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.1.S1_x_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.2.S1_x_at4/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51460Os.30797.1.S1_at11/111+29910723..29911423expressed protein
LOC_Os01g51460OsAffx.23746.1.S1_s_at1/111+29910723..29911423expressed protein
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein
LOC_Os01g51500OsAffx.9361.1.S1_at11/111+29919562..29920194hypothetical protein
LOC_Os01g51510OsAffx.23746.1.S1_s_at11/111+29920574..29921173hypothetical protein
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein
LOC_Os01g51560NANA1+29943858..29944301hypothetical protein
LOC_Os01g51570Os.4159.1.S1_at11/111+29947803..29949168Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g51580OsAffx.23749.1.S1_at11/111+29949261..29949839hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9359.1.S1_at--553--7511Chr01:29924785..29924809 (25 bp)
GTGGACGAATGCGAGCCGAGTCTAT
NONE
OsAffx.9359.1.S1_at--397--4071Chr01:29924774..29924798 (25 bp)
CGAGCCGAGTCTATGGTACGAGGTA
NONE
OsAffx.9359.1.S1_at--443--851Chr01:29924746..29924770 (25 bp)
ATGGCGGTGCTGTTCCCGTCCAATT
LOC_Os01g51520
OsAffx.9359.1.S1_at--1102--3131Chr01:29924725..29924749 (25 bp)
AATTACTTCCTGCTTAGCTTCTGGT
LOC_Os01g51520
OsAffx.9359.1.S1_at--1132--6451Chr01:29924684..29924708 (25 bp)
GATAATCTACCAGGCGTTCGGCGCA
LOC_Os01g51520
OsAffx.9359.1.S1_at--1140--3851Chr01:29924652..29924676 (25 bp)
CTGTTGTTAACATCGACAAGCCGAT
LOC_Os01g51520
OsAffx.9359.1.S1_at--646--2211Chr01:29924637..29924661 (25 bp)
ACAAGCCGATCGAGAGCTCCATCGA
LOC_Os01g51520
OsAffx.9359.1.S1_at--330--1371Chr01:29924625..29924649 (25 bp)
AGAGCTCCATCGAGCTTGTCGGCGT
LOC_Os01g51520
OsAffx.9359.1.S1_at--988--9211Chr01:29924570..29924594 (25 bp)
TCCAGGTCCAGGAGTTGCCTCGCGG
LOC_Os01g51520
OsAffx.9359.1.S1_at--517--4711Chr01:29924549..29924573 (25 bp)
GCGGCCGGCGTTCAATCTACTCGTG
LOC_Os01g51520
OsAffx.9359.1.S1_at--653--9731Chr01:29924538..29924562 (25 bp)
TCAATCTACTCGTGCGCATCGACAA
LOC_Os01g51520
Target Sequence 
GTGGACGAATGCGAGCCGAGTCTATGGTACGAGGTAGCCATGGCGGTGCTGTTCCCGTCCAATTACTTCCTGCTTAGCTT
CTGGTTTTTTCTTGGTTTTTGGATAATCTACCAGGCGTTCGGCGCATTCGGCGCTGTTGTTAACATCGACAAGCCGATCG
AGAGCTCCATCGAGCTTGTCGGCGTCAGCGGGCTGGTGCCGGTGCTGGCCCTGGCTCCAGGTCCAGGAGTTGCCTCGCGG
CCGGCGTTCAATCTACTCGTGCGCATCGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis