Browse Element(s) Details


Os.30797.1.S1_at

Description gb:AK108302.1
DB_XREF= gi:32993511
TID=Os.30797.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456F08.28 (P0456F08.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F02, full insert sequence.
FL= gb:AK108302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5146011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51410Os.26642.1.S1_a_at11/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51410OsAffx.23425.1.S1_at1/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51420OsAffx.11559.1.S1_at11/111+29895394..29898137Calcineurin B-like protein 10, putative, expressed
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein
LOC_Os01g51440OsAffx.21546.1.S1_s_at3/111+29905381..29905830hypothetical protein
LOC_Os01g51450OsAffx.28030.1.S1_s_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.1.S1_x_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.2.S1_x_at4/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51460Os.30797.1.S1_at11/111+29910723..29911423expressed protein
LOC_Os01g51460OsAffx.23746.1.S1_s_at1/111+29910723..29911423expressed protein
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein
LOC_Os01g51500OsAffx.9361.1.S1_at11/111+29919562..29920194hypothetical protein
LOC_Os01g51510OsAffx.23746.1.S1_s_at11/111+29920574..29921173hypothetical protein
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30797.1.S1_at--294--6631Chr01:29911106..29911130 (25 bp)
GTTGTCGGAGGATCTACGCGACCTT
LOC_Os01g51460
Os.30797.1.S1_at--744--4611Chr01:29911123..29911147 (25 bp)
GCGACCTTCTTGTCTCAGAGTTGCA
LOC_Os01g51460
Os.30797.1.S1_at--484--3431Chr01:29911138..29911162 (25 bp)
CAGAGTTGCAGCAGGGCACAGCGAA
LOC_Os01g51460
Os.30797.1.S1_at--804--2151Chr01:29911155..29911179 (25 bp)
ACAGCGAAGGTTTCCGTCGAGATGA
LOC_Os01g51460
Os.30797.1.S1_at--215--8111Chr01:29911231..29911255 (25 bp)
GGACGACGTCGATTTCACAGGAGCT
LOC_Os01g51460
Os.30797.1.S1_at--234--10591Chr01:29911255..29911279 (25 bp)
TTCTCCTGGACTCCTGGGAGGACAA
LOC_Os01g51460
Os.30797.1.S1_at--1027--10011Chr01:29911286..29911310 (25 bp)
TAGCAGTTTGCTCAAGACGAAGGCT
LOC_Os01g51460
Os.30797.1.S1_at--214--4031Chr01:29911303..29911327 (25 bp)
CGAAGGCTGGTCTCCCGGGAAGACA
LOC_Os01g51460
Os.30797.1.S1_at--1069--3031Chr01:29911356..29911380 (25 bp)
AATCCTGACGAGTTATTCTTTTTCT
LOC_Os01g51460
Os.30797.1.S1_at--782--10311Chr01:29911376..29911400 (25 bp)
TTTCTTTGTTGCGTTTTCTTTTGTG
LOC_Os01g51460
Os.30797.1.S1_at--356--4631Chr01:29911386..29911410 (25 bp)
GCGTTTTCTTTTGTGAACTCAGCAT
LOC_Os01g51460
Target Sequence 
GTTGTCGGAGGATCTACGCGACCTTCTTGTCTCAGAGTTGCAGCAGGGCACAGCGAAGGTTTCCGTCGAGATGAAGCTGC
ACTACTACGCTAATTTCGGCATGGCTGCCTTCGCGCCCAGCTCTGGGACGACGTCGATTTCACAGGAGCTTCTCCTGGAC
TCCTGGGAGGACAACATGAATAGCAGTTTGCTCAAGACGAAGGCTGGTCTCCCGGGAAGACAAGATGAATAATATAGTTT
ATTCAAGATGAATCCTGACGAGTTATTCTTTTTCTTTGTTGCGTTTTCTTTTGTGAACTCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis