Browse Element(s) Details


OsAffx.28030.1.S1_s_at

Description tigr:9629.m04985
TID=OsAffx.28030.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Nucleosome assembly protein (NAP), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5145011/11Nucleosome assembly protein containing protein
LOC_Os06g4092011/11Nucleosome assembly protein containing protein
LOC_Os05g1457011/11Nucleosome assembly protein containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51410Os.26642.1.S1_a_at11/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51410OsAffx.23425.1.S1_at1/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51420OsAffx.11559.1.S1_at11/111+29895394..29898137Calcineurin B-like protein 10, putative, expressed
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein
LOC_Os01g51440OsAffx.21546.1.S1_s_at3/111+29905381..29905830hypothetical protein
LOC_Os01g51450OsAffx.28030.1.S1_s_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.1.S1_x_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.2.S1_x_at4/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51460Os.30797.1.S1_at11/111+29910723..29911423expressed protein
LOC_Os01g51460OsAffx.23746.1.S1_s_at1/111+29910723..29911423expressed protein
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein
LOC_Os01g51500OsAffx.9361.1.S1_at11/111+29919562..29920194hypothetical protein
LOC_Os01g51510OsAffx.23746.1.S1_s_at11/111+29920574..29921173hypothetical protein
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28030.1.S1_s_at--840--2313Chr05:8281435..8281459 (25 bp)
AAAGGGTGTTCCAGATTTCTGGCTC
LOC_Os05g14570
OsAffx.28030.1.S1_s_at--1037--1053Chr05:8281437..8281461 (25 bp)
AGGGTGTTCCAGATTTCTGGCTCAA
LOC_Os05g14570
OsAffx.28030.1.S1_s_at--819--6013Chr05:8281999..8282023 (25 bp)
GAGAGTTCAGAGAGCACTAAACCTA
LOC_Os05g14570
OsAffx.28030.1.S1_s_at--315--6073Chr05:8282001..8282025 (25 bp)
GAGTTCAGAGAGCACTAAACCTATA
LOC_Os05g14570
OsAffx.28030.1.S1_s_at--1130--10513Chr05:8282004..8282028 (25 bp)
TTCAGAGAGCACTAAACCTATAACA
LOC_Os05g14570
OsAffx.28030.1.S1_s_at--282--6013Chr05:8282008..8282032 (25 bp)
GAGAGCACTAAACCTATAACAAAGA
LOC_Os05g14570
OsAffx.28030.1.S1_s_at--261--5093Chr05:8282012..8282036 (25 bp)
GCACTAAACCTATAACAAAGACTGA
LOC_Os05g14570
OsAffx.28030.1.S1_s_at--262--2373Chr05:8282017..8282041 (25 bp)
AAACCTATAACAAAGACTGAAGAAT
LOC_Os05g14570
OsAffx.28030.1.S1_s_at--1038--6013Chr05:8282487..8282511 (25 bp)
GAGAGGCTGTTCAAGACGAGGATTA
LOC_Os05g14570
OsAffx.28030.1.S1_s_at--516--6213Chr05:8282489..8282513 (25 bp)
GAGGCTGTTCAAGACGAGGATTATG
LOC_Os05g14570
OsAffx.28030.1.S1_s_at--607--913Chr05:8282490..8282514 (25 bp)
AGGCTGTTCAAGACGAGGATTATGG
LOC_Os05g14570
Target Sequence 
AAAGGGTGTTCCAGATTTCTGGCTCAAAGCAATGAAGAACAATGAGATTCTTGCTGAGGAGATCCATGAGAGCGATGAGG
AAGCTCTGAAGTACCTTAAGGACATCAAATGGTGCAGAATTGATGATCCAAAGGGTTTTAAGTTCGAATTCTTTTTCGAT
ACAAATCCCTTCTTTAAAAATCAAGTGCTGACTAAAACATACCACATGATTGATGAAGATGATGAACCCATCCTAGAGAA
AGCAATTGGGACTGAAATCGAATGGCATCCAGGAAATTGTTTGACACAGGAGGTGCTAACAAAAGAGAGTTCAGAGAGCA
CTAAACCTATAACAAAGACTGAAGAATATGAGAGCTTCTTTAACTTCTTCAGCCCCCCTCAAGTTCCAGAGGATGATGCA
AAAATTGACGAAAATACCGCTGAAGAATTGCAGAACCAAATGGAACGAGATTATGACATTGCATCTACTCTCAGGGACAA
GATTATACCACATGTTGTTTCTTGGTTCACTGGAGAGGCTGTTCAAGACGAGGATTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28030.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis