Browse Element(s) Details


OsAffx.28030.2.S1_x_at

Description tigr:9634.m03932
TID=OsAffx.28030.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Nucleosome assembly protein (NAP), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4092011/11Nucleosome assembly protein containing protein
LOC_Os05g145705/11Nucleosome assembly protein containing protein
LOC_Os01g514504/11Nucleosome assembly protein containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40850Os.56087.1.S1_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40850OsAffx.15866.1.S1_x_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40860OsAffx.28029.1.S1_at11/116+24368838..24371851pentatricopeptide, putative, expressed
LOC_Os06g40870OsAffx.15867.1.S1_at11/116+24372218..24374215expressed protein
LOC_Os06g40870Os.55285.1.S1_at10/116+24372218..24374215expressed protein
LOC_Os06g40880Os.49993.1.S1_at9/116+24378830..24381171Polygalacturonase family protein, expressed
LOC_Os06g40890Os.53450.1.S1_at11/116+24383028..24385067Exopolygalacturonase precursor, putative, expressed
LOC_Os06g40900NANA6+24385490..24387005retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40910Os.41883.1.S1_at1/116+24387284..24387874Cytidine and deoxycytidylate deaminase zinc-binding region family protein
LOC_Os06g40920OsAffx.28030.2.S1_x_at11/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.1.S1_s_at11/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.1.S1_x_at5/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.3.S1_at1/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40930OsAffx.15868.1.S1_at11/116+24395609..24396039hypothetical protein
LOC_Os06g40940Os.26642.1.S1_a_at11/116+24398549..24405053Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g40940OsAffx.23425.1.S1_at1/116+24398549..24405053Glycine dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28030.2.S1_x_at--1083--4332Chr05:8281445..8281469 (25 bp)
CCAGATTTCTGGCTCAATGCAATGA
LOC_Os05g14570
OsAffx.28030.2.S1_x_at--635--6053Chr05:8281478..8281659 (25 bp)
GAGATTCTTGCTGAGGAGATCCATG
LOC_Os05g14570
OsAffx.28030.2.S1_x_at--907--6313Chr05:8281815..8281835 (21 bp)
GATGAACCCATCCTAGAGAAAGCAA
LOC_Os05g14570
OsAffx.28030.2.S1_x_at--1056--8271Chr06:24389739..24389763 (25 bp)
GGCATCCAGGATATTGTTTGACACA
LOC_Os06g40920
OsAffx.28030.2.S1_x_at--316--6073Chr05:8282001..8282025 (25 bp)
GAGTTCAGAGAGCACTAAACCTATA
LOC_Os05g14570
OsAffx.28030.2.S1_x_at--637--4191Chr06:24389628..24389652 (25 bp)
CCCCTCAAGTTCCAGATGATGATGC
LOC_Os06g40920
OsAffx.28030.2.S1_x_at--678--151Chr06:24389273..24389488 (25 bp)
ATTATGACATCGCATCTACTCTCAG
LOC_Os06g40920
OsAffx.28030.2.S1_x_at--392--7671Chr06:24389249..24389273 (25 bp)
GGGATAAGATTATACCACACGCTGT
LOC_Os06g40920
OsAffx.28030.2.S1_x_at--269--3312Chr05:8282463..8282855 (25 bp)
CACACGCTGTTTCTTGGTTTACTAG
NONE
OsAffx.28030.2.S1_x_at--1037--6013Chr05:8282487..8282511 (25 bp)
GAGAGGCTGTTCAAGACGAGGATTA
LOC_Os05g14570
OsAffx.28030.2.S1_x_at--609--1851Chr06:24389195..24389219 (25 bp)
ACGAGGATTATGGAGCTTCTTGGGT
LOC_Os06g40920
Target Sequence 
CCAGATTTCTGGCTCAATGCAATGAAGAACAATGAGATTCTTGCTGAGGAGATCCATGAGAGCGATGAGGAAGCTCTAAA
GTACCTTAAGGACATCAAATGGTGTAGAATTGATGATCCAAAGGGTTTTAAGTTCGAATTCTTCTTCTATACAAATCCCT
TCTTTAAAAATCAAGTGCTGACTAAAACATACCACATGATCGATGAAGATGATGAACCCATCCTAGAGAAAGCAATTGGG
ACTGAAATCGAATGGCATCCAGGATATTGTTTGACACAAGAGGTGCTAACAAAGGAGAGTTCAGAGAGCACTAAACCTAT
AACAAAGACTGAAGAATGTGAGAGCTTCTTTAATTTCTTTAGCCCCCCTCAAGTTCCAGATGATGATGCAAAAATAGATG
AAAATACCGCTGAAGAATTGCAGAACCAAATGGAACGAGATTATGACATCGCATCTACTCTCAGGGATAAGATTATACCA
CACGCTGTTTCTTGGTTTACTAGAGAGGCTGTTCAAGACGAGGATTATGGAGCTTCTTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28030.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis