Browse Element(s) Details

Os.49993.1.S1_at

Description

gb:AK119501.1
DB_XREF= gi:37989124
TID=Os.49993.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-E08, full insert sequence.
FL= gb:AK119501.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g40880	9/11	Polygalacturonase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g40830	Os.37083.2.S1_at	1/11	6	+	24356542..24356868	retrotransposon protein, putative, unclassified
LOC_Os06g40840	Os.47954.1.S1_at	11/11	6	+	24358245..24362678	microtubule associated protein family protein, putative, expressed
LOC_Os06g40850	Os.56087.1.S1_at	11/11	6	+	24363004..24365498	IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40850	OsAffx.15866.1.S1_x_at	11/11	6	+	24363004..24365498	IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40860	OsAffx.28029.1.S1_at	11/11	6	+	24368838..24371851	pentatricopeptide, putative, expressed
LOC_Os06g40870	OsAffx.15867.1.S1_at	11/11	6	+	24372218..24374215	expressed protein
LOC_Os06g40870	Os.55285.1.S1_at	10/11	6	+	24372218..24374215	expressed protein
LOC_Os06g40880	Os.49993.1.S1_at	9/11	6	+	24378830..24381171	Polygalacturonase family protein, expressed
LOC_Os06g40890	Os.53450.1.S1_at	11/11	6	+	24383028..24385067	Exopolygalacturonase precursor, putative, expressed
LOC_Os06g40900	NA	NA	6	+	24385490..24387005	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40910	Os.41883.1.S1_at	1/11	6	+	24387284..24387874	Cytidine and deoxycytidylate deaminase zinc-binding region family protein
LOC_Os06g40920	OsAffx.28030.2.S1_x_at	11/11	6	+	24389140..24393629	Nucleosome assembly protein containing protein
LOC_Os06g40920	OsAffx.28030.1.S1_s_at	11/11	6	+	24389140..24393629	Nucleosome assembly protein containing protein
LOC_Os06g40920	OsAffx.28030.1.S1_x_at	5/11	6	+	24389140..24393629	Nucleosome assembly protein containing protein
LOC_Os06g40920	OsAffx.28030.3.S1_at	1/11	6	+	24389140..24393629	Nucleosome assembly protein containing protein
LOC_Os06g40930	OsAffx.15868.1.S1_at	11/11	6	+	24395609..24396039	hypothetical protein
LOC_Os06g40940	Os.26642.1.S1_a_at	11/11	6	+	24398549..24405053	Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g40940	OsAffx.23425.1.S1_at	1/11	6	+	24398549..24405053	Glycine dehydrogenase, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0005975	biological_process	carbohydrate metabolism
GO:0004650	molecular_function	polygalacturonase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49993.1.S1_at--864--961	1	Chr06:24380355..24380379 (25 bp)	TCATGAGGAGAGTCCGCAACCCCAT	LOC_Os06g40880
Os.49993.1.S1_at--108--383	1	Chr06:24380413..24380778 (25 bp)	CTGCCACCATCAATCGGAGCGGCGG	LOC_Os06g40880
Os.49993.1.S1_at--594--795	1	Chr06:24380792..24380816 (25 bp)	GGATCAGCGACGTGAAGTTCAGGAA	LOC_Os06g40880
Os.49993.1.S1_at--923--761	1	Chr06:24380897..24380921 (25 bp)	GGGACATCGACCTCAGATACGTCAG	LOC_Os06g40880
Os.49993.1.S1_at--244--421	1	Chr06:24380993..24381017 (25 bp)	CCCCTTGCATATGAAAATCTGTTTT	LOC_Os06g40880
Os.49993.1.S1_at--530--681	1	Chr06:24381046..24381070 (25 bp)	GTTTTCTTTCTATATAGCGTACAGT	LOC_Os06g40880
Os.49993.1.S1_at--945--463	1	Chr06:24381062..24381086 (25 bp)	GCGTACAGTCACAGAGAGTTGGCGT	LOC_Os06g40880
Os.49993.1.S1_at--668--847	1	Chr06:24381081..24381105 (25 bp)	TGGCGTGGACGAAATTTTGGTTCTT	LOC_Os06g40880
Os.49993.1.S1_at--1027--1085	1	NONE	TTGGTTCTTGTAAACGGCCGATGAC	NONE
Os.49993.1.S1_at--998--841	1	NONE	GGCCGATGACGAGATTGATCCTTAA	NONE
Os.49993.1.S1_at--822--209	1	Chr06:24381145..24381169 (25 bp)	ACATCTTGTTCTCCCCTGTAATGGA	LOC_Os06g40880

Target Sequence

TCATGAGGAGAGTCCGCAACCCCATCATCATCGACCAGGAGTACTGCCCCTATCTCTCCTGCCACCATCAATCGGAGCGG
CGGCCGTCGGTGGTGAGGATCAGCGACGTGAAGTTCAGGAACATCAGGGGGGTGTCGGCGACGCAGGTGGCGGTGAAGCT
GTCGTGCAGCGCGGCGAGCCCGTGCCGAGGGATGGAGCTCAGGGACATCGACCTCAGATACGTCAGGCGAGGGGTGGCCA
CCGTGTCGCGGTGCGCCAACGTCGCCGGAGGCGTCGCCGGCGGGACGCTTGTGCCGCCCCCTTGCATATGAAAATCTGTT
TTCTGTTTTTTTTTCTTTTTTCACTTTCTTGTTTTCTTTCTATATAGCGTACAGTCACAGAGAGTTGGCGTGGACGAAAT
TTTGGTTCTTGTAAACGGCCGATGACGAGATTGATCCTTAATTATGGGGACATCTTGTTCTCCCCTGTAATGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis