Browse Element(s) Details


OsAffx.28030.3.S1_at

Description tigr:9633.m01276
TID=OsAffx.28030.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Nucleosome assembly protein (NAP), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g145708/11Nucleosome assembly protein containing protein
LOC_Os06g409201/11Nucleosome assembly protein containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14550OsAffx.4335.1.S1_s_at11/115+8256273..8270285Phosphatidylinositol 3-kinase tor2, putative, expressed
LOC_Os05g14560Os.14491.2.S1_x_at3/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14560Os.47463.1.S1_x_at1/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14560Os.41934.1.A1_x_at1/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14570OsAffx.28030.1.S1_s_at11/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.3.S1_at8/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.2.S1_x_at5/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.1.S1_x_at4/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14580OsAffx.14692.1.S1_at11/115+8284019..8285801hypothetical protein
LOC_Os05g14580Os.23416.2.S1_at4/115+8284019..8285801hypothetical protein
LOC_Os05g14580Os.23416.1.S1_at1/115+8284019..8285801hypothetical protein
LOC_Os05g14590Os.54267.1.S1_at10/115+8292205..8298700DNA replication licensing factor MCM6, putative, expressed
LOC_Os05g14600NANA5+8299488..8303111retrotransposon protein, putative, unclassified
LOC_Os05g14610NANA5+8303784..8307299hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28030.3.S1_at--10--8551NONE
TGGAGATTCAGCGTTCTAAAATTGT
NONE
OsAffx.28030.3.S1_at--956--6551Chr05:8281260..8281280 (21 bp)
GATTCAGCGTTCTAAAATTGTGAGT
LOC_Os05g14570
OsAffx.28030.3.S1_at--614--111Chr06:24389725..24390241 (25 bp)
ATTCTTGCTGAGGAGGTGCTAACAA
LOC_Os06g40920
OsAffx.28030.3.S1_at--1157--1191Chr05:8282076..8282100 (25 bp)
AGTTCCAGATGATGACGCAAAAAAT
LOC_Os05g14570
OsAffx.28030.3.S1_at--1040--2371Chr05:8282096..8282427 (25 bp)
AAAATGACGAATATACCCTTGCCCA
LOC_Os05g14570
OsAffx.28030.3.S1_at--146--2991Chr05:8282098..8282429 (25 bp)
AATGACGAATATACCCTTGCCCATG
LOC_Os05g14570
OsAffx.28030.3.S1_at--406--5791NONE
GACGAATATACCCTTGCCCATGTTG
NONE
OsAffx.28030.3.S1_at--994--10171Chr05:8282107..8282438 (25 bp)
TATACCCTTGCCCATGTTGCCAGAT
LOC_Os05g14570
OsAffx.28030.3.S1_at--626--4331Chr05:8282425..8282449 (25 bp)
CCATGTTGCCAGATCTACTCTTAGG
LOC_Os05g14570
OsAffx.28030.3.S1_at--309--6691Chr05:8282429..8282453 (25 bp)
GTTGCCAGATCTACTCTTAGGGACA
LOC_Os05g14570
OsAffx.28030.3.S1_at--471--4351Chr05:8282433..8282457 (25 bp)
CCAGATCTACTCTTAGGGACAAGAT
LOC_Os05g14570
Target Sequence 
TGGAGATTCAGCGTTCTAAAATTGTGAGTGGTGTTCTTGAAGTAGAGGGCGAGACCGAAGAAAGAGAGGAAAAGGGTGTT
CCAGATTTCTGGCTCAATGCAATGAAGAAGAATGAGATTCTTGCTGAGGAGGTGCTAACAAAGGAGAGTTCAGAGAGCAC
TAAACCTATAACAAAGACTGAAGAATGTGAGAGCTTCTTTAACTTCTTCAGCCCCCCTCAAGTTCCAGATGATGACGCAA
AAAATGACGAATATACCCTTGCCCATGTTGCCAGATCTACTCTTAGGGACAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28030.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis