Browse Element(s) Details


OsAffx.4335.1.S1_s_at

Description tigr:9633.m01273
TID=OsAffx.4335.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Phosphatidylinositol 3- and 4-kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1455011/11Phosphatidylinositol 3-kinase tor2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14550OsAffx.4335.1.S1_s_at11/115+8256273..8270285Phosphatidylinositol 3-kinase tor2, putative, expressed
LOC_Os05g14560Os.14491.2.S1_x_at3/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14560Os.47463.1.S1_x_at1/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14560Os.41934.1.A1_x_at1/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14570OsAffx.28030.1.S1_s_at11/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.3.S1_at8/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.2.S1_x_at5/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.1.S1_x_at4/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14580OsAffx.14692.1.S1_at11/115+8284019..8285801hypothetical protein
LOC_Os05g14580Os.23416.2.S1_at4/115+8284019..8285801hypothetical protein
LOC_Os05g14580Os.23416.1.S1_at1/115+8284019..8285801hypothetical protein
LOC_Os05g14590Os.54267.1.S1_at10/115+8292205..8298700DNA replication licensing factor MCM6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007004biological_processtelomerase-dependent telomere maintenance
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0043247biological_processtelomere maintenance in response to DNA damage
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0016303molecular_functionphosphatidylinositol 3-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4335.1.S1_s_at--778--9591Chr05:8269803..8269827 (25 bp)
TCATAAGCTCACAGGGCGCGATTTC
LOC_Os05g14550
OsAffx.4335.1.S1_s_at--636--2131Chr05:8269813..8269837 (25 bp)
ACAGGGCGCGATTTCTCTTCCGGAT
LOC_Os05g14550
OsAffx.4335.1.S1_s_at--831--191Chr05:8269823..8269847 (25 bp)
ATTTCTCTTCCGGATCATCGTTGTC
LOC_Os05g14550
OsAffx.4335.1.S1_s_at--564--8171Chr05:8269855..8269879 (25 bp)
GGAAGCTCCACCCAACATGGTAACG
LOC_Os05g14550
OsAffx.4335.1.S1_s_at--632--2111Chr05:8269869..8269893 (25 bp)
ACATGGTAACGAGCATCTGGCTTCA
LOC_Os05g14550
OsAffx.4335.1.S1_s_at--813--4971Chr05:8269881..8269905 (25 bp)
GCATCTGGCTTCAGGAGACACTCGA
LOC_Os05g14550
OsAffx.4335.1.S1_s_at--814--5611Chr05:8269897..8269921 (25 bp)
GACACTCGAGAGGTGGAACCTGGTT
LOC_Os05g14550
OsAffx.4335.1.S1_s_at--581--7511Chr05:8269909..8269933 (25 bp)
GTGGAACCTGGTTTATCCGTGAAGG
LOC_Os05g14550
OsAffx.4335.1.S1_s_at--6--7891Chr05:8269932..8269956 (25 bp)
GGTTCAGGTTCAGAGGCTTATACTT
LOC_Os05g14550
OsAffx.4335.1.S1_s_at--1014--8291Chr05:8269946..8269970 (25 bp)
GGCTTATACTTCAAGCGACTTCGCA
LOC_Os05g14550
OsAffx.4335.1.S1_s_at--542--5691Chr05:8269962..8269986 (25 bp)
GACTTCGCATGAAAACTTGTGCCAA
LOC_Os05g14550
Target Sequence 
TCATAAGCTCACAGGGCGCGATTTCTCTTCCGGATCATCGTTGTCGGGGGCGGGAAGCTCCACCCAACATGGTAACGAGC
ATCTGGCTTCAGGAGACACTCGAGAGGTGGAACCTGGTTTATCCGTGAAGGTTCAGGTTCAGAGGCTTATACTTCAAGCG
ACTTCGCATGAAAACTTGTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4335.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis