Browse Element(s) Details


OsAffx.14692.1.S1_at

Description tigr:9633.m01278
TID=OsAffx.14692.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GGPP synthase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1458011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14550OsAffx.4335.1.S1_s_at11/115+8256273..8270285Phosphatidylinositol 3-kinase tor2, putative, expressed
LOC_Os05g14560Os.14491.2.S1_x_at3/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14560Os.47463.1.S1_x_at1/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14560Os.41934.1.A1_x_at1/115+8271898..8276270transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14570OsAffx.28030.1.S1_s_at11/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.3.S1_at8/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.2.S1_x_at5/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14570OsAffx.28030.1.S1_x_at4/115+8280207..8282581Nucleosome assembly protein containing protein
LOC_Os05g14580OsAffx.14692.1.S1_at11/115+8284019..8285801hypothetical protein
LOC_Os05g14580Os.23416.2.S1_at4/115+8284019..8285801hypothetical protein
LOC_Os05g14580Os.23416.1.S1_at1/115+8284019..8285801hypothetical protein
LOC_Os05g14590Os.54267.1.S1_at10/115+8292205..8298700DNA replication licensing factor MCM6, putative, expressed
LOC_Os05g14600NANA5+8299488..8303111retrotransposon protein, putative, unclassified
LOC_Os05g14610NANA5+8303784..8307299hypothetical protein
LOC_Os05g14620NANA5+8307955..8308290prpol, putative
LOC_Os05g14629OsAffx.8338.1.S1_x_at1/115+8308685..8309563NA
LOC_Os05g14629OsAffx.22240.1.S1_x_at1/115+8308685..8309563NA

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004311molecular_functionfarnesyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14692.1.S1_at--843--7331Chr05:8285665..8285689 (25 bp)
GTGCAGCTCGCGTCCTGGCAACAGG
LOC_Os05g14580
OsAffx.14692.1.S1_at--192--9351Chr05:8285658..8285682 (25 bp)
TCGCGTCCTGGCAACAGGCAGTAGA
LOC_Os05g14580
OsAffx.14692.1.S1_at--403--6591Chr05:8285360..8285652 (25 bp)
GATTGCGACCATGAGGATTGTTGAT
LOC_Os05g14580
OsAffx.14692.1.S1_at--1137--8671Chr05:8285324..8285348 (25 bp)
TGTGACCATGTCTTCTGACGAGCTT
LOC_Os05g14580
OsAffx.14692.1.S1_at--781--3511Chr05:8285318..8285342 (25 bp)
CATGTCTTCTGACGAGCTTGGCAAG
LOC_Os05g14580
OsAffx.14692.1.S1_at--240--9471Chr05:8285311..8285335 (25 bp)
TCTGACGAGCTTGGCAAGACAGCGG
LOC_Os05g14580
OsAffx.14692.1.S1_at--1120--6491Chr05:8285261..8285285 (25 bp)
GATATACCCAAAATTACTTGGGCTA
LOC_Os05g14580
OsAffx.14692.1.S1_at--311--3231Chr05:8285167..8285191 (25 bp)
CAAGAGAAGGCAGCACCACTTCTAC
LOC_Os05g14580
OsAffx.14692.1.S1_at--819--2931Chr05:8285161..8285185 (25 bp)
AAGGCAGCACCACTTCTACACCTGG
LOC_Os05g14580
OsAffx.14692.1.S1_at--556--3891Chr05:8285140..8285164 (25 bp)
CTGGCCAATTATATTACCTATATCG
LOC_Os05g14580
OsAffx.14692.1.S1_at--1161--10191Chr05:8285129..8285153 (25 bp)
TATTACCTATATCGACAGAACTGAG
LOC_Os05g14580
Target Sequence 
GTGCAGCTCGCGTCCTGGCAACAGGCAGTAGATGGTCGATTGCGACCATGAGGATTGTTGATGATATACTTGATGTGACC
ATGTCTTCTGACGAGCTTGGCAAGACAGCGGGGAAGGACTTGGCGAGTGACAAGACGATATACCCAAAATTACTTGGGCT
AGAGAAATCACGGGGGTTTGCAGAAAAGTTGCTTTCTGATGCAAGGGAACAACTTTTTTCAGGATTTGATCAAGAGAAGG
CAGCACCACTTCTACACCTGGCCAATTATATTACCTATATCGACAGAACTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis