Browse Element(s) Details


Os.8988.1.S1_at

Description gb:AK109920.1
DB_XREF= gi:32995129
TID=Os.8988.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8988 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1142C05.29 (B1142C05.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-E10, full insert sequence.
FL= gb:AK109920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5161011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein
LOC_Os01g51560NANA1+29943858..29944301hypothetical protein
LOC_Os01g51570Os.4159.1.S1_at11/111+29947803..29949168Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g51580OsAffx.23749.1.S1_at11/111+29949261..29949839hypothetical protein
LOC_Os01g51590OsAffx.17040.2.S1_x_at1/111+29951331..29952332hypothetical protein
LOC_Os01g51610Os.8988.1.S1_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51610Os.8988.2.S1_x_at11/111+29964938..29969748B3 DNA binding domain containing protein, expressed
LOC_Os01g51620Os.13981.1.S1_at1/111+29972714..29975884Ribosomal RNA assembly protein mis3, putative
LOC_Os01g51630Os.33073.1.S2_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.33073.1.S1_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.50543.1.S1_x_at1/111+29979439..30002205Myosin head family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009657biological_processplastid organization and biogenesis
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0009790biological_processembryonic development
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010116biological_processpositive regulation of abscisic acid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0017163molecular_functionnegative regulator of basal transcription activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8988.1.S1_at--1028--4271Chr01:29969495..29969519 (25 bp)
CCTCACATGTGAGACTGACAGGGAA
LOC_Os01g51610
Os.8988.1.S1_at--20--3851Chr01:29969509..29969533 (25 bp)
CTGACAGGGAAGTGGTATTTCATAC
LOC_Os01g51610
Os.8988.1.S1_at--940--7851Chr01:29969522..29969546 (25 bp)
GGTATTTCATACCATGGTCAGTTTG
LOC_Os01g51610
Os.8988.1.S1_at--600--1731Chr01:29969532..29969556 (25 bp)
ACCATGGTCAGTTTGTATGAAGCTC
LOC_Os01g51610
Os.8988.1.S1_at--256--10011Chr01:29969547..29969571 (25 bp)
TATGAAGCTCAGAAACCCCTTCCCT
LOC_Os01g51610
Os.8988.1.S1_at--781--3911Chr01:29969570..29969594 (25 bp)
CTGGCGCCATTGTTGTACATCCAAA
LOC_Os01g51610
Os.8988.1.S1_at--1064--10831Chr01:29969598..29969622 (25 bp)
TTGGTGTCCTTATTTTGACGCTGTA
LOC_Os01g51610
Os.8988.1.S1_at--918--8931Chr01:29969613..29969637 (25 bp)
TGACGCTGTATATGCTAACTGCTAC
LOC_Os01g51610
Os.8988.1.S1_at--854--3111Chr01:29969656..29969680 (25 bp)
AATATTTTGTTCACAACCCAACTGG
LOC_Os01g51610
Os.8988.1.S1_at--1147--2151Chr01:29969668..29969692 (25 bp)
ACAACCCAACTGGAGGTTTAATCAG
LOC_Os01g51610
Os.8988.1.S1_at--793--7051Chr01:29969703..29969727 (25 bp)
GTAACTCTGTTCAGTTCAGCTCAGA
LOC_Os01g51610
Target Sequence 
CCTCACATGTGAGACTGACAGGGAAGTGGTATTTCATACCATGGTCAGTTTGTATGAAGCTCAGAAACCCCTTCCCTGGC
GCCATTGTTGTACATCCAAATAATTGGTGTCCTTATTTTGACGCTGTATATGCTAACTGCTACATGCAGTTTTATGTGTA
AAATATTTTGTTCACAACCCAACTGGAGGTTTAATCAGATGAAACATTGTAACTCTGTTCAGTTCAGCTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis