Browse Element(s) Details


Os.33140.1.A1_a_at

Description gb:AK101631.1
DB_XREF= gi:32986840
TID=Os.33140.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033054O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033054O17, full insert sequence.
FL= gb:AK101631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0302011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02990Os.12004.1.S1_at11/115+1093800..1096088expressed protein
LOC_Os05g03000Os.49718.1.S1_at11/115+1105037..1110434Integral membrane protein TerC family protein, expressed
LOC_Os05g03010OsAffx.26702.1.S1_at11/115+1115992..1117997hypothetical protein
LOC_Os05g03020Os.33140.1.A1_a_at11/115+1120053..1123770Zinc finger, C2H2 type family protein, expressed
LOC_Os05g03030OsAffx.26703.1.S1_x_at11/115+1124360..1125115ribosomal protein L10 family protein, putative, expressed
LOC_Os05g03040Os.11230.1.S1_s_at11/115+1134013..1138231floral homeotic protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33140.1.A1_a_at--189--5171Chr05:1123102..1123126 (25 bp)
GCAAGAGTTTTTCGTACAAGCATGT
LOC_Os05g03020
Os.33140.1.A1_a_at--787--7311Chr05:1123150..1123170 (21 bp)
GTGCTCATGTGTACGTTCAGGCTAA
LOC_Os05g03020
Os.33140.1.A1_a_at--1122--5351Chr05:1123356..1123380 (25 bp)
GAAGAGGGTAGCTGCTCCTGATGAT
LOC_Os05g03020
Os.33140.1.A1_a_at--277--711Chr05:1123376..1123400 (25 bp)
ATGATGATGCCCCAGCTTGTGATGA
LOC_Os05g03020
Os.33140.1.A1_a_at--371--10771Chr05:1123414..1123438 (25 bp)
TTGAGATGGCTTCTCTCAGGCTGAT
LOC_Os05g03020
Os.33140.1.A1_a_at--266--9631Chr05:1123429..1123453 (25 bp)
TCAGGCTGATTCGTCGTGAACCAGA
LOC_Os05g03020
Os.33140.1.A1_a_at--390--2591Chr05:1123515..1123539 (25 bp)
AACGTTCTTTTCCTTTGTGCATGTA
LOC_Os05g03020
Os.33140.1.A1_a_at--1035--5831Chr05:1123569..1123593 (25 bp)
GACCTCTATGTACTGTCTCAGACAT
LOC_Os05g03020
Os.33140.1.A1_a_at--626--3411Chr05:1123610..1123634 (25 bp)
CAGAATGCAGAAACGCCAGATCTTT
LOC_Os05g03020
Os.33140.1.A1_a_at--421--6951Chr05:1123666..1123690 (25 bp)
GTAGCAACGTTCTCTCTTTTTGTAT
LOC_Os05g03020
Os.33140.1.A1_a_at--329--5811Chr05:1123720..1123744 (25 bp)
GACCCTAATGTCTTGTGACAGGCAT
LOC_Os05g03020
Target Sequence 
GCAAGAGTTTTTCGTACAAGCATGTAAGGGACAACCATGAGAAATCTAGTGCTCATGTGTACGTTCAGGCTAATTTCGAA
GAAATTGACGGGGAACGACCACGTCAAGCAGGTGGGAGGAAGAGGAAAGCCATACCTGTGGAGAGTTTGATGCGGAAGAG
GGTAGCTGCTCCTGATGATGATGCCCCAGCTTGTGATGATGGAACTGAGTATTTGAGATGGCTTCTCTCAGGCTGATTCG
TCGTGAACCAGAATACAGAAATGTGAGATCTTTGGATATCAANNNTGTTGATATGGTTTGAGATACTAGTAGCAACGTTC
TTTTCCTTTGTGCATGTATAGGTAAAACATGGAAGTAATTTTGATAAGACCTCTATGTACTGTCTCAGACATCAAGTTNC
CAGAAGTCCAGAATGCAGAAACGCCAGATCTTTANANNNNCAAGGGTGTTTATGTGCTAGTTAGGTAGCAACGTTCTCTC
TTTTTGTATGTATAGGAAAAGTGAAAGGAATTTTAGTAGACCCTAATGTCTTGTGACAGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33140.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis