Browse Element(s) Details


Os.33205.1.S1_at

Description gb:AK101379.1
DB_XREF= gi:32986588
TID=Os.33205.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036D04, full insert sequence.
FL= gb:AK101379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2311011/11tRNA synthetases class I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23070NANA8+13757639..13764364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23080NANA8+13767440..13771427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23090OsAffx.10633.1.S1_at7/118+13775243..13776999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23090OsAffx.30389.1.S1_x_at2/118+13775243..13776999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23100Os.55409.1.S1_at10/118+13780107..13786943cyclase family protein, putative, expressed
LOC_Os08g23100OsAffx.15945.1.S1_at1/118+13780107..13786943cyclase family protein, putative, expressed
LOC_Os08g23110Os.33205.1.S1_at11/118+13787131..13792601tRNA synthetases class I family protein, expressed
LOC_Os08g23110Os.33205.1.S1_x_at11/118+13787131..13792601tRNA synthetases class I family protein, expressed
LOC_Os08g23120Os.9869.1.S1_at11/118+13797608..13801838RNA recognition motif family protein, expressed
LOC_Os08g23130Os.50452.2.S1_x_at11/118+13804750..13809222Oligopeptide transporter 5, putative, expressed
LOC_Os08g23140Os.14494.1.S1_at11/118+13810994..13817843expressed protein
LOC_Os08g23140Os.53108.1.S1_at1/118+13810994..13817843expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33205.1.S1_at--594--10331Chr08:13791405..13791429 (25 bp)
TTTACAAACATGGATGAACTCATCG
LOC_Os08g23110
Os.33205.1.S1_at--522--7991Chr08:13791416..13791440 (25 bp)
GGATGAACTCATCGATGATTATAAG
LOC_Os08g23110
Os.33205.1.S1_at--879--9611Chr08:13791424..13791448 (25 bp)
TCATCGATGATTATAAGACTGGTGC
LOC_Os08g23110
Os.33205.1.S1_at--251--8791Chr08:13791464..13791488 (25 bp)
TGTTAAGCCAGCTCTAGCAAAAGCA
LOC_Os08g23110
Os.33205.1.S1_at--928--2651Chr08:13791468..13791492 (25 bp)
AAGCCAGCTCTAGCAAAAGCAATAA
LOC_Os08g23110
Os.33205.1.S1_at--954--5131Chr08:13791790..13791814 (25 bp)
GCAAAGATTCTGCTTAACACTGTTA
LOC_Os08g23110
Os.33205.1.S1_at--767--5431Chr08:13792350..13792374 (25 bp)
GAACCTAATATTTAATGGAGGAATT
LOC_Os08g23110
Os.33205.1.S1_at--304--8551Chr08:13792365..13792389 (25 bp)
TGGAGGAATTTTGTTTGCCATTTTT
LOC_Os08g23110
Os.33205.1.S1_at--364--411Chr08:13792491..13792515 (25 bp)
ATCAGTATGGTGCAATGAATGTTCA
LOC_Os08g23110
Os.33205.1.S1_at--13--5631Chr08:13792545..13792569 (25 bp)
GACAAAAGTCGAGTGCAAAGTGCAA
LOC_Os08g23110
Os.33205.1.S1_at--361--5131Chr08:13792559..13792583 (25 bp)
GCAAAGTGCAAACATATGGTGGAAA
LOC_Os08g23110
Target Sequence 
TTTACAAACATGGATGAACTCATCGATGATTATAAGACTGGTGCTTTGCATCCTGCTGATGTTAAGCCAGCTCTAGCAAA
AGCAATAAACCAAATATTGCAGCCTATTCGTGACCACTTCAATAACAACAGTGAAGCAAAGATTCTGCTTAACACTGTTA
AGAAGTACAGAGTAACCAACTAAGGAGGAAACTAGTTCAAGCATCTTTGTCCTATTGANCTACCTGGATATTTTCTATGG
CTACTTTGGAACCATATGAACCTAATATTTAATGGAGGAATTTTGTTTGCCATTTTTTTGTTTTTGTTTTTTTATGTACT
GAGTTGCAGAGCAACCATTGCATGGTACTGCACAAACTTTGTTTAGATTATTAGTTGTCAGATACCCAATCTCGTTTTAT
CAGTATGGTGCAATGAATGTTCATGATCACCTTAATGTTATAGATTTGACAAGACAAAAGTCGAGTGCAAAGTGCAAACA
TATGGTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis