Browse Element(s) Details


Os.55409.1.S1_at

Description gb:AK108030.1
DB_XREF= gi:32993239
TID=Os.55409.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-B04, full insert sequence.
FL= gb:AK108030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2310010/11cyclase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23060NANA8+13752632..13755424retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23070NANA8+13757639..13764364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23080NANA8+13767440..13771427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23090OsAffx.10633.1.S1_at7/118+13775243..13776999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23090OsAffx.30389.1.S1_x_at2/118+13775243..13776999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23100Os.55409.1.S1_at10/118+13780107..13786943cyclase family protein, putative, expressed
LOC_Os08g23100OsAffx.15945.1.S1_at1/118+13780107..13786943cyclase family protein, putative, expressed
LOC_Os08g23110Os.33205.1.S1_at11/118+13787131..13792601tRNA synthetases class I family protein, expressed
LOC_Os08g23110Os.33205.1.S1_x_at11/118+13787131..13792601tRNA synthetases class I family protein, expressed
LOC_Os08g23120Os.9869.1.S1_at11/118+13797608..13801838RNA recognition motif family protein, expressed
LOC_Os08g23130Os.50452.2.S1_x_at11/118+13804750..13809222Oligopeptide transporter 5, putative, expressed
LOC_Os08g23140Os.14494.1.S1_at11/118+13810994..13817843expressed protein
LOC_Os08g23140Os.53108.1.S1_at1/118+13810994..13817843expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55409.1.S1_at--1003--5691Chr08:13781554..13781578 (25 bp)
GACTATTTGTCTGTTGCAGCTTTTG
LOC_Os08g23100
Os.55409.1.S1_at--173--5071Chr08:13781539..13781563 (25 bp)
GCAGCTTTTGATGACTTGATCCCGT
LOC_Os08g23100
Os.55409.1.S1_at--108--10751Chr08:13781524..13781548 (25 bp)
TTGATCCCGTCACATTTAGTTCTTC
LOC_Os08g23100
Os.55409.1.S1_at--47--251Chr08:13780682..13780706 (25 bp)
ATATCATTCTTGTCGAGGGCCTCAA
LOC_Os08g23100
Os.55409.1.S1_at--325--10171Chr08:13780648..13780672 (25 bp)
TATCATGCCTGGGATATACTCCTTG
LOC_Os08g23100
Os.55409.1.S1_at--667--7951Chr08:13780548..13780572 (25 bp)
GGATCAGTGCGTTTGCTAGTATCAA
LOC_Os08g23100
Os.55409.1.S1_at--721--5151Chr08:13780522..13780546 (25 bp)
GCAACTTCAGTTGCACTGGATCACT
LOC_Os08g23100
Os.55409.1.S1_at--725--31Chr08:13780379..13780403 (25 bp)
ATTGTGTCATGTCGGTGCTAAGCTC
LOC_Os08g23100
Os.55409.1.S1_at--1113--2071Chr08:13780289..13780313 (25 bp)
ACATTCTGCGACTTCTCTTTTGAAC
LOC_Os08g23100
Os.55409.1.S1_at--404--9734Chr03:28331938..28332327 (25 bp)
TCAATTGAAGTTTAGGGCCCCTTTG
NONE
Os.55409.1.S1_at--652--1031Chr08:13780095..13780119 (25 bp)
AGGTCTAACCTCCAAGTCTATCTCT
NONE
Target Sequence 
GACTATTTGTCTGTTGCAGCTTTTGATGACTTGATCCCGTCACATTTAGTTCTTCTCAAAAACAGGGATATCATTCTTGT
CGAGGGCCTCAAACTGGAAAATATCATGCCTGGGATATACTCCTTGCACTGCCTGCCACTTCGGCTGCGGGGTGCTGAAG
GTTCACCAATCAGATGCATCCTTATAAAGTGAAGGGGACTAGGATCAGTGCGTTTGCTAGTATCAATGCAACTTCAGTTG
CACTGGATCACTGCATGATGCAGGTCTGCCAAATAAAATTGTGTCATGTCGGTGCTAAGCTCTTGGACTTGGAAGCTGTA
CAGCATAGTCGTAAAACACACAACTATCGATGAACTGCACAATGGGCACATTCTGCGACTTCTCTTTTGAACAAACTCAA
TTGAAGTTTAGGGCCCCTTTGATTTGTATGAAAAATGTAGGAATTTTGGAGGATTTCAATTCTATGAAGGCCTTTGAAAT
AAAGAATTGAATCATATCCAATTCTTTAAAATTCCTATGGAATAGGTAATTCTATGTACATTTTGAAGGAAAGTTAGTAA
GAGGTCTAACCTCCAAGTCTATCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis