Browse Element(s) Details


Os.33601.1.S1_at

Description gb:AK099935.1
DB_XREF= gi:32985144
TID=Os.33601.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077M12.7 (OSJNBa0077M12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119K14, full insert sequence.
FL= gb:AK099935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3257011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32530OsAffx.17296.1.S1_x_at11/118+20018462..20019765hypothetical protein
LOC_Os08g32540OsAffx.29475.2.S1_s_at11/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32540OsAffx.29475.2.S1_at5/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32550NANA8+20029908..20030588Zinc knuckle family protein
LOC_Os08g32560OsAffx.17297.1.S1_at11/118+20032192..20032860hypothetical protein
LOC_Os08g32570Os.54408.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.2.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.54408.1.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32580Os.2741.4.S1_x_at8/118+20043808..20049748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32590Os.31488.1.S1_at11/118+20051949..20053335retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g32600Os.32734.1.S1_at11/118+20054145..20059544Protein kinase domain containing protein, expressed
LOC_Os08g32610OsAffx.29477.1.S1_x_at11/118+20062870..20064679U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33601.1.S1_at--111--3231Chr08:20041096..20041120 (25 bp)
CAAGTTTATCTTCCTCATGTACTGA
LOC_Os08g32570
Os.33601.1.S1_at--676--6151Chr08:20041168..20041192 (25 bp)
GAGGTACCATCATGTCTTTGTATCT
LOC_Os08g32570
Os.33601.1.S1_at--215--6071Chr08:20041334..20041358 (25 bp)
GAGTTCGGGAATAGCTAGCCTACAG
LOC_Os08g32570
Os.33601.1.S1_at--571--9571Chr08:20041393..20041417 (25 bp)
TCTTGCCACTGACTTTACCATTAAC
LOC_Os08g32570
Os.33601.1.S1_at--136--1752Chr08:20041416..20041440 (25 bp)
ACCTTATCCTATTGGTTCATCGTAA
LOC_Os08g32570
Os.33601.1.S1_at--144--251Chr08:20041445..20041469 (25 bp)
ATATACTCCTATTTTCTGTCAGGTA
LOC_Os08g32570
Os.33601.1.S1_at--621--7111Chr08:20041462..20041486 (25 bp)
GTCAGGTACTATCGTGCTGTTTTAC
LOC_Os08g32570
Os.33601.1.S1_at--327--1031Chr08:20041490..20041514 (25 bp)
AGGTCTCAACTCTCAATGCACTGAA
LOC_Os08g32570
Os.33601.1.S1_at--1142--6671Chr08:20041535..20041559 (25 bp)
GTTGCCCCACTATCATCCAGAATTT
LOC_Os08g32570
Os.33601.1.S1_at--589--9211Chr08:20041550..20041574 (25 bp)
TCCAGAATTTCAGACCGCAGTTTGT
LOC_Os08g32570
Os.33601.1.S1_at--462--8771Chr08:20041572..20041596 (25 bp)
TGTATTGCGGCAATTTCCCTTCTTT
LOC_Os08g32570
Target Sequence 
CAAGTTTATCTTCCTCATGTACTGAGAAACTGCATAATTTATCAACTTTTCATGAATCCCATTTCCTCATATGAGGTACC
ATCATGTCTTTGTATCTTAGGTGAATCCTGTTTGTTTTTTTAGATATGATTATCATCTTCAAACTTCCATCTGTACTACA
TATATATATCGAGTATTTTCAGTATTGTTCTTCTTGCCCCCATAGGTTTGGAAGCTAGCGTTTGATAAATAATAAACTGA
GTTCGGGAATAGCTAGCCTACAGCAGATGAGAAAAAAAACATATACAACCATTCAGCTCTTGCCACTGACTTTACCATTA
ACCTTATCCTATTGGTTCATCGTAAATAAATATACTCCTATTTTCTGTCAGGTACTATCGTGCTGTTTTACATGAGGTCT
CAACTCTCAATGCACTGAAAGTGAAGCATTGTGCAAAAAGTTGCCCCACTATCATCCAGAATTTCAGACCGCAGTTTGTA
TTGCGGCAATTTCCCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis