Browse Element(s) Details


Os.3372.1.S1_at

Description gb:AK062117.1
DB_XREF= gi:32972135
TID=Os.3372.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.3372 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for glutaredoxin
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C06, full insert sequence.
FL= gb:AK065962.1 gb:AK062117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4293011/11Glutaredoxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42860Os.50483.1.S1_at9/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42860OsAffx.31434.2.S1_x_at2/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42870Os.6179.1.S1_at11/114+25153397..25155482methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os04g42880Os.49846.1.S1_at11/114+25155544..25157616WD repeat-containing protein C9orf112 homolog, putative, expressed
LOC_Os04g42889OsAffx.4065.1.S1_at11/114+25161173..25161781hypothetical protein
LOC_Os04g42900Os.53218.1.S1_at11/114+25162623..25165852expressed protein
LOC_Os04g42900OsAffx.24850.1.S1_s_at1/114+25162623..25165852expressed protein
LOC_Os04g42910OsAffx.14247.1.S1_at9/114+25166960..25169381hypothetical protein
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42960Os.50332.1.S1_at11/114+25197992..25199617Lung seven transmembrane receptor family protein, expressed
LOC_Os04g42970OsAffx.14248.1.S1_at11/114+25201206..25201820hypothetical protein
LOC_Os04g42980Os.52137.1.S1_at11/114+25204973..25210172zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3372.1.S1_at--1032--7531Chr04:25180248..25180446 (25 bp)
GTGGCTGTGATGATACTTTGGCATT
LOC_Os04g42930
Os.3372.1.S1_at--1117--2871Chr04:25180455..25180479 (25 bp)
AAGGGAAGCTGGTGCCTCTGCTGAC
LOC_Os04g42930
Os.3372.1.S1_at--491--9491Chr04:25180471..25180495 (25 bp)
TCTGCTGACCGAGGCTGGAGCAATT
LOC_Os04g42930
Os.3372.1.S1_at--347--8071Chr04:25180487..25180511 (25 bp)
GGAGCAATTGCCAGTTCTGCAAAGA
LOC_Os04g42930
Os.3372.1.S1_at--584--391Chr04:25180517..25180541 (25 bp)
ATCACCGCATAGTTCTTCGTGGGAC
LOC_Os04g42930
Os.3372.1.S1_at--1153--10611Chr04:25180532..25180556 (25 bp)
TTCGTGGGACACTGGGACTAGCCTT
LOC_Os04g42930
Os.3372.1.S1_at--739--2011Chr04:25180548..25180572 (25 bp)
ACTAGCCTTCGTTGACCTCTTTATA
LOC_Os04g42930
Os.3372.1.S1_at--70--1751Chr04:25180562..25180586 (25 bp)
ACCTCTTTATACTGCATCCATTCTA
LOC_Os04g42930
Os.3372.1.S1_at--650--5171Chr04:25180615..25180639 (25 bp)
GCAAGACCATTACTTGTTGCCGTCT
LOC_Os04g42930
Os.3372.1.S1_at--390--6691Chr04:25180630..25180654 (25 bp)
GTTGCCGTCTAGTATCGTGTGATAG
LOC_Os04g42930
Os.3372.1.S1_at--308--7291Chr04:25180662..25180686 (25 bp)
GTGCCCGTGTGAAACTCCTTGGACA
LOC_Os04g42930
Target Sequence 
GTGGCTGTGATGATACTTTGGCATTGAACAATGAAGGGAAGCTGGTGCCTCTGCTGACCGAGGCTGGAGCAATTGCCAGT
TCTGCAAAGACGACAATCACCGCATAGTTCTTCGTGGGACACTGGGACTAGCCTTCGTTGACCTCTTTATACTGCATCCA
TTCTATTAGATAATAAAGGTGGATGTTTGTTTGGCAAGACCATTACTTGTTGCCGTCTAGTATCGTGTGATAGCTATCCT
GTGCCCGTGTGAAACTCCTTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis