Browse Element(s) Details


Os.33737.1.S1_at

Description gb:AK070389.1
DB_XREF= gi:32980413
TID=Os.33737.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0004B24.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048I16, full insert sequence.
FL= gb:AK070389.1 gb:AK099276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3712011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37050OsAffx.10473.1.S1_at11/113+20500767..20502777transposon protein, putative, Mutator sub-class
LOC_Os03g37060OsAffx.22702.1.S1_at11/113+20503355..20504706transposon protein, putative, Mutator sub-class
LOC_Os03g37070OsAffx.10472.1.S1_at11/113+20505109..20505543Cytochrome P450 71E1, putative
LOC_Os03g37080OsAffx.25393.1.S1_at11/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37080OsAffx.22701.1.S1_at7/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37090Os.37371.1.S1_at10/113+20513407..20516312Uncharacterised protein family containing protein, expressed
LOC_Os03g37100Os.32970.1.S1_at11/113+20517953..20519695DTW domain containing protein, expressed
LOC_Os03g37110OsAffx.13205.1.S1_at10/113+20520864..20523154hypothetical protein
LOC_Os03g37120Os.33737.1.S1_at11/113+20523944..20527235transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g37130Os.2713.1.S1_at11/113+20528890..20533981Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g37140Os.51979.1.S1_at11/113+20539056..20544407expressed protein
LOC_Os03g37170OsAffx.30564.1.S1_s_at11/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.2.S1_s_at8/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.2.S1_x_at5/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.3.S1_at4/113+20548981..20549804hypothetical protein
LOC_Os03g37170OsAffx.30564.1.S1_at4/113+20548981..20549804hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33737.1.S1_at--129--9671Chr03:20526328..20526352 (25 bp)
TCAGCCCCTCGGAGAAGAGAGCTTA
LOC_Os03g37120
Os.33737.1.S1_at--1004--1231Chr03:20526352..20526498 (25 bp)
AGTTGAATGGGCTCGGCCTCTCCTG
LOC_Os03g37120
Os.33737.1.S1_at--1110--5791Chr03:20526502..20526526 (25 bp)
GACGCGTTGGAGACGGACGACTTCA
LOC_Os03g37120
Os.33737.1.S1_at--679--1651Chr03:20526551..20526575 (25 bp)
AGCGCCGCTACTCCAAGTCGGAGAT
LOC_Os03g37120
Os.33737.1.S1_at--931--8091Chr03:20526916..20526940 (25 bp)
GGACCTGACCAACGGAGTGAAGCTT
LOC_Os03g37120
Os.33737.1.S1_at--453--3611Chr03:20526938..20526962 (25 bp)
CTTGGGCAGAGCATGGCGTACGACT
LOC_Os03g37120
Os.33737.1.S1_at--594--9571Chr03:20526990..20527014 (25 bp)
TCTTCCGGCGGATGGCGTTTGCCAA
LOC_Os03g37120
Os.33737.1.S1_at--6--971Chr03:20527089..20527113 (25 bp)
AGGACCAGGCCCAGCTGAGCACTAA
LOC_Os03g37120
Os.33737.1.S1_at--399--3731Chr03:20527110..20527134 (25 bp)
CTAACGGCACATGCGCTGTTGTTAA
LOC_Os03g37120
Os.33737.1.S1_at--502--6631Chr03:20527139..20527163 (25 bp)
GTTGTCGTAACTAACACGCATGCAT
LOC_Os03g37120
Os.33737.1.S1_at--971--8291Chr03:20527205..20527229 (25 bp)
GGCTTTGAATAGCAATCCTGTTGAT
LOC_Os03g37120
Target Sequence 
TCAGCCCCTCGGAGAAGAGAGCTTAGTTGAATGGGCTCGGCCTCTCCTGGTGGACGCGTTGGAGACGGACGACTTCAGGG
AGCTCGCTGACCCCGCGCTGGAGCGCCGCTACTCCAAGTCGGAGATGCGGAGGATGGTGGAGGCCGCGGCCGCTTGCATT
CGCTACTCCGTCACCAAGAGACCAAGGATGGTGCAGGTGTGGCGATCGCTGGACGTGGAGGGGAGCTCGCCGGACCTGAC
CAACGGAGTGAAGCTTGGGCAGAGCATGGCGTACGACTCCAACCAGTACTCGGCGGACATCGAGCTCTTCCGGCGGATGG
CGTTTGCCAACGACCTCTCCACCGCTGAGCTCGGCTACTCCGGCAAGGACGACGTACGCCGTCCGCCACGCTAGCAGCAG
CTCCAGGACCAGGCCCAGCTGAGCACTAACGGCACATGCGCTGTTGTTAAATTTGTTGTCGTAACTAACACGCATGCATG
TATGTAAGACGGGGTGGCAGAATTGGTGTATATATAAAAAGGCTTTGAATAGCAATCCTGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis