Browse Element(s) Details


Os.33786.1.S1_at

Description gb:AK061847.1
DB_XREF= gi:32971865
TID=Os.33786.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F03, full insert sequence.
FL= gb:AK061847.1 gb:AK098955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5845011/11Uncharacterized ACR, COG1399 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58410Os.27842.1.S1_at11/112+35712181..35724680expressed protein
LOC_Os02g58420NANA2+35725387..35725647hypothetical protein
LOC_Os02g58430OsAffx.13097.1.S1_s_at11/112+35726314..35731898transposon protein, putative, Mutator sub-class
LOC_Os02g58440Os.27604.1.S1_at11/112+35733119..35737451Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g58450Os.33786.1.S1_at11/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450Os.17160.1.S1_s_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450OsAffx.13616.1.S1_x_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58460Os.10719.1.S1_at11/112+35741366..35745423Beta-catenin-like protein 1, putative, expressed
LOC_Os02g58470Os.40059.1.S1_at11/112+35745597..35747736expressed protein
LOC_Os02g58480Os.52194.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58480Os.51168.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58490Os.7419.1.S1_a_at11/112+35755309..35762519PINHEAD protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33786.1.S1_at--737--4371Chr02:35737320..35737344 (25 bp)
CCAAAGCTCCTTCGCTAACCGGAAG
LOC_Os02g58450
Os.33786.1.S1_at--507--2671Chr02:35737317..35737341 (25 bp)
AAGCTCCTTCGCTAACCGGAAGCCA
LOC_Os02g58450
Os.33786.1.S1_at--558--3751Chr02:35737314..35737338 (25 bp)
CTCCTTCGCTAACCGGAAGCCAAGA
LOC_Os02g58450
Os.33786.1.S1_at--473--2151Chr02:35737085..35737109 (25 bp)
ACAGCAGGCCAAGAATGTTCAGCGG
LOC_Os02g58450
Os.33786.1.S1_at--452--3791Chr02:35736925..35736949 (25 bp)
CTCGTCCTCCTTTTTGAGCTCATCT
LOC_Os02g58450
Os.33786.1.S1_at--522--3671Chr02:35736916..35736940 (25 bp)
CTTTTTGAGCTCATCTCCTACTCTA
LOC_Os02g58450
Os.33786.1.S1_at--343--10251Chr02:35736913..35736937 (25 bp)
TTTGAGCTCATCTCCTACTCTACTT
LOC_Os02g58450
Os.33786.1.S1_at--996--9251Chr02:35736903..35736927 (25 bp)
TCTCCTACTCTACTTTTTAAGACGG
LOC_Os02g58450
Os.33786.1.S1_at--977--5731Chr02:35736883..35736907 (25 bp)
GACGGAAAAATAGACGCCATGACTT
LOC_Os02g58450
Os.33786.1.S1_at--86--3111Chr02:35736875..35736899 (25 bp)
AATAGACGCCATGACTTGTCTGTTT
LOC_Os02g58450
Os.33786.1.S1_at--660--1391Chr02:35736872..35736896 (25 bp)
AGACGCCATGACTTGTCTGTTTGCT
LOC_Os02g58450
Target Sequence 
CCAAAGCTCCTTCGCTAACCGGAAGCCAAGAAGATGGAGACGATGAAGATATAGATTGGGATGACCGGCTGCATTTCCCA
GCTGGAGAAAAGGAGATTGATATNTCAAAGCACATCAGGGACATCATTCACTTGGAGATCACGCTCGATGCCCTGTGCAG
TCCCACCTGCAAAGGTNTNTGCCTTGGCTGCGGCNAAAACCTCAACACCAGCAGCTGCAGNTGCAACGCAGAGAAACAGC
AGGCCAAGAATGTTCAGCGGCGAGGGCCTNTCAAAGACCTGTTGAAGCCNCTGCAAAGGTGATGTAAANNCCGCNCGGCA
GATTTTATACGGTGATATGTATGTAATACTTTGTAGGAGTATTCGAAGANTAATATGTTTAGATGATAAANTTCTTCTCG
TCCTCCTTTTTGAGCTCATCTCCTACTCTACTTTTTAAGACGGAAAAATAGACGCCATGACTTGTCTGTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis