Browse Element(s) Details


Os.33885.1.S1_at

Description gb:AK060305.1
DB_XREF= gi:32970323
TID=Os.33885.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0030H07.40 (P0030H07.40), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A09, full insert sequence.
FL= gb:AK073659.1 gb:AK060305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0622011/11PrMC3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06150Os.31874.1.S1_at11/111+2927618..2929688expressed protein
LOC_Os01g06150Os.31874.2.S1_x_at10/111+2927618..2929688expressed protein
LOC_Os01g06160OsAffx.16187.1.S1_at1/111+2931530..2934520retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06170Os.28943.1.S1_x_at2/111+2938130..2941180retrotransposon protein, putative, unclassified
LOC_Os01g06180NANA1+2941800..2944537transposon protein, putative, unclassified
LOC_Os01g06200NANA1+2946899..2949815retrotransposon protein, putative, unclassified
LOC_Os01g06210Os.1899.1.S1_at1/111+2951316..2952306PrMC3, putative
LOC_Os01g06220Os.33885.1.S1_at11/111+2953968..2955241PrMC3, putative, expressed
LOC_Os01g06230NANA1+2957996..2958271Auxin responsive protein
LOC_Os01g06240OsAffx.23133.1.S1_at11/111+2959224..2961719D-mannose binding lectin family protein, expressed
LOC_Os01g06250OsAffx.10935.1.S1_x_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06250OsAffx.10935.1.S1_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06260OsAffx.10558.2.S1_s_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.2.S1_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_x_at9/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_at5/111+2965956..2967533hypothetical protein
LOC_Os01g06270Os.19218.1.S1_x_at11/111+2967932..2976115expressed protein
LOC_Os01g06270Os.37997.1.S1_s_at11/111+2967932..2976115expressed protein
LOC_Os01g06270OsAffx.10936.1.S1_x_at10/111+2967932..2976115expressed protein
LOC_Os01g06280Os.33613.1.S1_at11/111+2979344..2982962Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33885.1.S1_at--220--1831Chr01:2954512..2954536 (25 bp)
ACGCCCGACATGTCCGACAAGCTGT
LOC_Os01g06220
Os.33885.1.S1_at--922--2211Chr01:2954496..2954520 (25 bp)
ACAAGCTGTGGCGTCTGTCGCTGCC
LOC_Os01g06220
Os.33885.1.S1_at--520--6171Chr01:2954284..2954308 (25 bp)
GAGGAGAAGCACCTGTTCTTGTCGC
LOC_Os01g06220
Os.33885.1.S1_at--960--1751Chr01:2954274..2954298 (25 bp)
ACCTGTTCTTGTCGCTGCAGCCATG
LOC_Os01g06220
Os.33885.1.S1_at--724--1691Chr01:2954256..2954280 (25 bp)
AGCCATGGAGCGAGCCAGCCAACGA
LOC_Os01g06220
Os.33885.1.S1_at--713--7871Chr01:2954191..2954215 (25 bp)
GGTTCTAATAACTTCTAAATCCAAG
LOC_Os01g06220
Os.33885.1.S1_at--431--3451Chr01:2954151..2954175 (25 bp)
CAGTAGAGATGCATGGTTGGTGTTC
LOC_Os01g06220
Os.33885.1.S1_at--170--6631Chr01:2954136..2954160 (25 bp)
GTTGGTGTTCTCATGTGGTCTGAAT
LOC_Os01g06220
Os.33885.1.S1_at--352--9531Chr01:2954128..2954152 (25 bp)
TCTCATGTGGTCTGAATCTGTGTTC
LOC_Os01g06220
Os.33885.1.S1_at--221--9611Chr01:2954099..2954123 (25 bp)
TCATCTTTTGTGTAAGTGTGCAACT
LOC_Os01g06220
Os.33885.1.S1_at--897--8731Chr01:2954089..2954113 (25 bp)
TGTAAGTGTGCAACTTCGATTCTGT
LOC_Os01g06220
Target Sequence 
ACGCCCGACATGTCCGACAAGCTGTGGCGTCTGTCGCTGCCGGAGGGGGCGACGAGGGACCACCCGGTGGCGAACCCGTT
CGGACCGGACAGCCCCAGCCTAGCGGCGGTGGCGTTCCCGCCGGTGCTCGTCGTGGTGGCCGGGCGCGACATCCTCCATG
ACCGCACCGTGCACTACGCGGCGAGGCTGAAGGAGATGGAGAAGCCGGTGGAGCTCGTCACCTTCGAGGAGGAGAAGCAC
CTGTTCTTGTCGCTGCAGCCATGGAGCGAGCCAGCCAACGAGTTAATCCGAGTCATGAAGCGATTTATCCACAAAGATGA
AGGTTCTAATAACTTCTAAATCCAAGTAAATTAAGTTGGATCAGTAGAGATGCATGGTTGGTGTTCTCATGTGGTCTGAA
TCTGTGTTCTGTTTCATCTTTTGTGTAAGTGTGCAACTTCGATTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis