Browse Element(s) Details


Os.33928.1.S1_x_at

Description gb:AK073480.1
DB_XREF= gi:32983503
TID=Os.33928.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Mla1 (B1085F01.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046J06, full insert sequence.
FL= gb:AK073480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4189011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41870Os.46049.1.S1_at11/111+24054178..24059925protein kinase family protein, putative, expressed
LOC_Os01g41880Os.22776.1.S1_s_at11/111+24067725..24071843Hyaluronan/mRNA binding family protein, expressed
LOC_Os01g41890Os.33928.1.S1_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.4.A1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.1.S1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890OsAffx.24510.1.S1_x_at1/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41900Os.15138.1.S1_at11/111+24087195..24089348MCB2 protein, putative, expressed
LOC_Os01g41910OsAffx.9156.2.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_s_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41920NANA1+24099163..24099531hypothetical protein
LOC_Os01g41930Os.9136.2.A1_at10/111+24103314..24106595Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33928.1.S1_x_at--236--9331Chr01:24077992..24078016 (25 bp)
TCGCCTTCCTCGACGTGTGGGTGGA
LOC_Os01g41890
Os.33928.1.S1_x_at--135--9171Chr01:24078162..24078186 (25 bp)
TGCGCGCTCCTGCACTTCGTGACGG
LOC_Os01g41890
Os.33928.1.S1_x_at--598--9511Chr01:24078232..24078256 (25 bp)
TCTCGTTCAGCCTCAGGGCATGGGA
LOC_Os01g41890
Os.33928.1.S1_x_at--497--9631Chr01:24078244..24078268 (25 bp)
TCAGGGCATGGGACTTCGCCGCCGC
LOC_Os01g41890
Os.33928.1.S1_x_at--233--6411Chr01:24078312..24078336 (25 bp)
GATCTGGGCATGCAGAACCTCCCTT
LOC_Os01g41890
Os.33928.1.S1_x_at--762--3631Chr01:24078334..24078358 (25 bp)
CTTCGCTCGAGGACGTTCGCGTCGA
LOC_Os01g41890
Os.33928.1.S1_x_at--24--6711Chr01:24078348..24078372 (25 bp)
GTTCGCGTCGAGGTTTGGTACAAGA
LOC_Os01g41890
Os.33928.1.S1_x_at--186--1951Chr01:24078489..24078513 (25 bp)
ACTGGATCGGCCCAATCCGATTCTT
LOC_Os01g41890
Os.33928.1.S1_x_at--149--3051Chr01:24078502..24078526 (25 bp)
AATCCGATTCTTCCACTTTGTCTAT
LOC_Os01g41890
Os.33928.1.S1_x_at--69--2051Chr01:24078516..24078540 (25 bp)
ACTTTGTCTATCTAAATCCAGTCAA
LOC_Os01g41890
Os.33928.1.S1_x_at--591--4331Chr01:24078533..24078557 (25 bp)
CCAGTCAATAATAATCGGCATGTTT
LOC_Os01g41890
Target Sequence 
TCGCCTTCCTCGACGTGTGGGTGGATCGGGTGAGGCGGGGCGACATCGGCGTCGTCGGGGAGCTGCCGGCCCTCCAGTCT
CTCCGGCTGCGGGCCACCGGCCGGATAGACGCGCGCCCGGCGGTGGAGCGGTTCGCGGTGCGCGCCGGCGCGTTCCCCTG
CGCGGCGGCGTGCGCGCTCCTGCACTTCGTGACGGCGCCGTCCATGTTCCCGCGAGGCGCCATGCCGAGGGTTCGGCGGC
TCTCGTTCAGCCTCAGGGCATGGGACTTCGCCGCCGCCGGCGATGGCGGCGGTGGTGGTGGGCTTAGGCTTGGGCTGCGC
GATCTGGGCATGCAGAACCTCCCTTCGCTCGAGGACGTTCGCGTCGAGGTTTGGTACAAGAACACGGGAGATGGCGGTGG
TTCGGCGGTGACGAGGAAGGTGGAGGAGGCACTGCGACGCGTGGCGGCCGTCCATCCCAACCGTCCGGCCATCAACATCC
GCAGGAGGAAGATGACGACTGGATCGGCCCAATCCGATTCTTCCACTTTGTCTATCTAAATCCAGTCAATAATAATCGGC
ATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33928.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis