Browse Element(s) Details


Os.3417.1.S1_at

Description gb:AU082940
DB_XREF= gi:7212637
DB_XREF=AU082940
CLONE=E1181
TID=Os.3417.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) pir7a protein (Pseudomonas inducible protein) (P0423A12.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7086011/11Esterase PIR7A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70800Os.11148.1.S1_at11/111+41305292..41310419Mitochondrial carrier protein, expressed
LOC_Os01g70810Os.18365.1.S1_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70810Os.18365.1.S2_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70820Os.37376.2.S1_x_at8/111+41321152..41323981expressed protein
LOC_Os01g70830Os.33625.3.S1_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70830Os.33625.5.S1_x_at1/111+41326677..41327733esterase PIR7A, putative, expressed
LOC_Os01g70840Os.33625.3.S1_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70840Os.33625.5.S1_x_at11/111+41329283..41330580Esterase PIR7B, putative, expressed
LOC_Os01g70850Os.33625.4.S1_at11/111+41331154..41332828Esterase PIR7B, putative, expressed
LOC_Os01g70860Os.3417.1.S1_at11/111+41334170..41336091Esterase PIR7A, putative, expressed
LOC_Os01g70870Os.34720.1.S1_at11/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70870Os.19512.2.S1_x_at2/111+41338179..41341912Zinc finger, C2H2 type family protein, expressed
LOC_Os01g70880OsAffx.23993.1.S1_at11/111+41348327..41348761CCAAT-binding transcription factor subunit A, putative
LOC_Os01g70890OsAffx.23994.1.S1_x_at11/111+41356233..41356766CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g70890OsAffx.23994.1.S1_at11/111+41356233..41356766CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g70900NANA1+41358624..41361797retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3417.1.S1_at--289--2411Chr01:41334748..41334772 (25 bp)
AAAACCATCGTCCTGAACACGAATC
LOC_Os01g70860
Os.3417.1.S1_at--342--9071Chr01:41334702..41334726 (25 bp)
TGCTTGGCCCCAAATTACTGGCAGA
LOC_Os01g70860
Os.3417.1.S1_at--850--9731Chr01:41334673..41334692 (20 bp)
TAATCGAAGCCCACCAGAGGATCTG
LOC_Os01g70860
Os.3417.1.S1_at--754--4351Chr01:41334583..41334603 (21 bp)
CCAGAGGATCTGACGCTGGCGACGA
LOC_Os01g70860
Os.3417.1.S1_at--915--10551Chr01:41334463..41334487 (25 bp)
TTCTTGGTCGCCATGGATGATGCTT
LOC_Os01g70860
Os.3417.1.S1_at--724--1291Chr01:41334426..41334450 (25 bp)
AGATGCAGCGGTGGACCATTGATCT
LOC_Os01g70860
Os.3417.1.S1_at--1031--8091Chr01:41334414..41334438 (25 bp)
GGACCATTGATCTGAGCCCAGGCGT
LOC_Os01g70860
Os.3417.1.S1_at--942--6431Chr01:41334364..41334388 (25 bp)
GATCACATGGCAATGTGCTCCAAGC
LOC_Os01g70860
Os.3417.1.S1_at--719--10471Chr01:41334260..41334284 (25 bp)
TTACGATTCCAGTATCTGTCTTCTA
LOC_Os01g70860
Os.3417.1.S1_at--1154--471Chr01:41334247..41334271 (25 bp)
ATCTGTCTTCTATCAGTGTTAAGCA
LOC_Os01g70860
Os.3417.1.S1_at--351--7071Chr01:41334210..41334234 (25 bp)
GTAATCAGTGGTTCGGTTGTGTTTT
LOC_Os01g70860
Target Sequence 
AAAACCATCGTCCTGAACACGAATCAAGAACCAAGAACCGCAGTTCTGCTTGGCCCCAAATTACTGGCAGAGAAACTGTA
TAATCGAAGCCCACCAGAGGATCTGACGCTGGCGACGATGCTGGTGAGNCCTGGCACCAACTACATCGATGNTCCGATCA
TGAAGGACGAGACGCTGCTCACTGAAGGNAACTACGGGTCGGTGAAGAGGGTGTTCTTGGTCGCCATGGATGATGCTTCG
AGCNACGAGGAGATGCAGCGGTGGACCATTGATCTGAGCCCAGGCGTGGAAGTCGAGGAGCTCGCCGGAGCGGATCACAT
GGCAATGTGCTCCAAGCCGAGGGAGCTGTGTGATTTGCTGNTCAGGATTGCAGCTAAGTATGACTAAGAAATGGTTTTAG
CAGGGTTAAAATTTTTTTACGATTCCAGTATCTGTCTTCTATCAGTGTTAAGCAGAAGAGAAACATGTAATCAGTGGTTC
GGTTGTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis