Browse Element(s) Details


Os.34474.2.S1_at

Description gb:NM_191205.1
DB_XREF= gi:34909493
GEN=P0481E12.17
TID=Os.34474.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.17 (P0481E12.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0481E12.17 (P0481E12.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g544302/11Plastocyanin-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54430Os.34474.2.S1_at2/111+31645119..31645936Plastocyanin-like domain containing protein
LOC_Os01g54440OsAffx.21624.1.S1_s_at11/111+31647011..31648696expressed protein
LOC_Os01g54450Os.42124.1.S1_x_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54450Os.42124.1.S1_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54460NANA1+31654170..31655105hypothetical protein
LOC_Os01g54470OsAffx.11605.1.S1_at11/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.28229.2.S1_x_at2/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.51561.1.S1_x_at1/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54480Os.8233.1.S1_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54480Os.8233.1.S1_s_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34474.2.S1_at--998--10511Chr01:31645469..31645493 (25 bp)
TTCATCAGCGGTGACGAGGACCGGT
LOC_Os01g54430
Os.34474.2.S1_at--1082--7011Chr01:31645430..31645449 (20 bp)
GTACATCATCGTGATGGCGGCGTTC
LOC_Os01g54430
Os.34474.2.S1_at--1020--8391NONE
GGCGCGGCAGGTGCTCAGTACATCT
NONE
Os.34474.2.S1_at--232--4831Chr01:31644528..31644552 (25 bp)
GCTCAGTACATCTGGAGTGACTTCA
NONE
Os.34474.2.S1_at--1002--6111Chr01:31644514..31644538 (25 bp)
GAGTGACTTCAATTGGGCCATTCTA
NONE
Os.34474.2.S1_at--687--3591Chr01:31644496..31644520 (25 bp)
CATTCTAATAGTGGCCCAAGCTGGG
NONE
Os.34474.2.S1_at--787--4171Chr01:31644482..31644506 (25 bp)
CCCAAGCTGGGCCTATAGAAGTTCT
NONE
Os.34474.2.S1_at--238--10171Chr01:31644469..31644493 (25 bp)
TATAGAAGTTCTGGGCCGGACTGCT
NONE
Os.34474.2.S1_at--57--1991Chr01:31644450..31644474 (25 bp)
ACTGCTCGGTGTGGCGTCGCGTCCT
NONE
Os.34474.2.S1_at--88--5891Chr01:31644411..31644435 (25 bp)
GAGCGCGTCTGGAATCTGCGGAATC
NONE
Os.34474.2.S1_at--50--5411Chr01:31644324..31644380 (25 bp)
GAAGCCGCGGTGAGTCCTATTCCAG
NONE
Target Sequence 
TTCATCAGCGGTGACGAGGACCGGTGCCAGAAGGGGCAGAAGCTGTACATCATCGTGATGGCGGCGTTCCCGCCAGCCGG
TGCTACCACCCCGCCGCCGCTGCCGCCGTCCTGGGGCTCGGCGCCTGAGCACGCGCAGGCTCCGGGCAAGAGCTCGCTGG
GTGGTTCTGGCGGCGGGGAAATGTCGCGCAGCAGCTCGCTTGGCGCGCCACCGCCGACGTCCGGCGCGGCAGGTGCTCAG
TACATCTGGAGTGACTTCAATTGGGCCATTCTAATAGTGGCCCAAGCTGGGCCTATAGAAGTTCTGGGCCGGACTGCTCG
GTGTGGCGTCGCGTCCTGGCAGTCGAGACGGGAGCGCGTCTGGAATCTGCGGAATCGCCGGGAGGGCGCGCGGTGCCGCT
GCCGCCGAAGCCGCGGTGAGTCCTATTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34474.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis