Browse Element(s) Details


Os.34549.1.S1_at

Description gb:AY222337.1
DB_XREF= gi:34391900
GEN=bHLH
TID=Os.34549.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34549 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transcription factor bHLH (bHLH) mRNA, complete cds.
PROD=putative transcription factor bHLH
FL= gb:AK070963.1 gb:AK059560.1 gb:AY222337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4353010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43470Os.10918.1.S1_at11/117+26017901..26023060Developmentally regulated GTP-binding protein 1, putative, expressed
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein
LOC_Os07g43490OsAffx.9077.1.S1_s_at11/117+26028836..26029606hypothetical protein
LOC_Os07g43500NANA7+26031490..26033546hypothetical protein
LOC_Os07g43510Os.41122.1.S1_at5/117+26034746..2603524640S ribosomal protein S9, putative
LOC_Os07g43519Os.41122.1.S1_at2/117+26036782..26037535NA
LOC_Os07g43530Os.34549.1.S1_at10/117+26037984..26040531Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g43540OsAffx.16697.1.S1_at10/117+26042848..26045797origin recognition complex subunit 6, putative, expressed
LOC_Os07g43560Os.27650.1.S1_at10/117+26050527..26054189Protein kinase domain containing protein, expressed
LOC_Os07g43570Os.6898.1.S1_at11/117+26057670..26061466Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34549.1.S1_at--810--2031Chr07:26038461..26038485 (25 bp)
ACATTTACCAGTCACCACGACGGCA
LOC_Os07g43530
Os.34549.1.S1_at--846--5791Chr07:26038181..26038205 (25 bp)
GACCGTATAGGTAGATCTTAGGTAC
LOC_Os07g43530
Os.34549.1.S1_at--998--7831Chr07:26038161..26038185 (25 bp)
GGTACACTACATAACGAGAGGTCCA
LOC_Os07g43530
Os.34549.1.S1_at--650--1871Chr07:26038148..26038172 (25 bp)
ACGAGAGGTCCACACAATGATTTGA
LOC_Os07g43530
Os.34549.1.S1_at--721--4371Chr07:26038139..26038163 (25 bp)
CCACACAATGATTTGAGAATTCCTT
LOC_Os07g43530
Os.34549.1.S1_at--894--5531Chr07:26038077..26038101 (25 bp)
GAAACAGAGATCTGCGACTGTGCTC
LOC_Os07g43530
Os.34549.1.S1_at--471--6411Chr07:26038069..26038093 (25 bp)
GATCTGCGACTGTGCTCATGGGTAG
LOC_Os07g43530
Os.34549.1.S1_at--147--4831Chr07:26038056..26038080 (25 bp)
GCTCATGGGTAGCACCTAATCTGTA
LOC_Os07g43530
Os.34549.1.S1_at--409--5091Chr07:26038045..26038069 (25 bp)
GCACCTAATCTGTATATCTGAATCT
LOC_Os07g43530
Os.34549.1.S1_at--654--5211Chr07:26038026..26038050 (25 bp)
GAATCTCAGTTTTAAGTGGTCAAAT
LOC_Os07g43530
Os.34549.1.S1_at--116--5591Chr07:26037983..26038004 (22 bp)
GAAATGCTTTGATTATTCTGTAAAA
NONE
Target Sequence 
ACATTTACCAGTCACCACGACGGCAGCATTTCCTCAGCAGCTACCGGTTATCATCGAGCAGCACTATGCCGCCACGCCAA
GAGAACTTCAGCTCTTCCCTGAGTCTGCGACCAGCGAAGACAGCGAACCGTCACAAGAACACGGGANTTCTGACCATGTA
ACACGGCCTCAGCCAAGGTACCCAACACCAACGGCCACTTTGCCAGTAAACCTGTTTCCAGTGTTTCCAGGAAGACAAGA
TCAACAATGTAGCAGTGGTACTTCTGGCACTAACGAGGAAGACCGTATAGGTAGATCTTAGGTACACTACATAACGAGAG
GTCCACACAATGATTTGAGAATTCCTTTAGTTTCAACGTTTAACTTTGCAAGTTTAGCAAATGTGAAACAGAGATCTGCG
ACTGTGCTCATGGGTAGCACCTAATCTGTATATCTGAATCTCAGTTTTAAGTGGTCAAATAGGTGACATTCAGAAAAGTT
TGAAATGCTTTGATTATTCTGTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis