Browse Element(s) Details


Os.34655.1.S1_at

Description gb:AK070618.1
DB_XREF= gi:32980642
TID=Os.34655.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative iron-phytosiderophore transporter protein yellow stripe 1 (B1088C09.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063A19, full insert sequence.
FL= gb:AK070618.1 gb:AY512583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6139011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61320Os.8865.4.S1_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.4.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.2.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61330Os.37113.1.S1_at11/111+35806920..35809034MSP domain containing protein, expressed
LOC_Os01g61340OsAffx.23882.1.S1_at10/111+35815856..35817124hypothetical protein
LOC_Os01g61350Os.24385.1.S1_at11/111+35818759..35819770Glutaredoxin family protein, expressed
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34655.1.S1_at--704--3931Chr01:35829243..35829267 (25 bp)
CGGCGGTGTCCATCGACATGTGCAT
LOC_Os01g61390
Os.34655.1.S1_at--1037--5071Chr01:35829216..35829240 (25 bp)
GCAGCCTGATCGTGTTCCTGTGGAA
LOC_Os01g61390
Os.34655.1.S1_at--287--8811Chr01:35829204..35829228 (25 bp)
TGTTCCTGTGGAACCGCAACGACAA
LOC_Os01g61390
Os.34655.1.S1_at--459--5151Chr01:35829189..35829213 (25 bp)
GCAACGACAAGCTGGGATCGCAGGT
LOC_Os01g61390
Os.34655.1.S1_at--549--4771Chr01:35829101..35829125 (25 bp)
GCTGCTCGCGAGGTACGACGTCACG
LOC_Os01g61390
Os.34655.1.S1_at--839--471Chr01:35829070..35829094 (25 bp)
ATCTGCATCAGGTTCCTCGGCCGGG
LOC_Os01g61390
Os.34655.1.S1_at--475--9431Chr01:35829054..35829078 (25 bp)
TCGGCCGGGTGCAGAACGACAAGCT
LOC_Os01g61390
Os.34655.1.S1_at--287--7611Chr01:35828965..35828989 (25 bp)
GGGCACAATTGTTTATTCCGTTCTT
LOC_Os01g61390
Os.34655.1.S1_at--784--10551Chr01:35828945..35828969 (25 bp)
TTCTTTTTCTTCCAACACCTGTAGA
LOC_Os01g61390
Os.34655.1.S1_at--161--5471Chr01:35828907..35828931 (25 bp)
GAACTGATCTTTTCATGTAGAGCGA
LOC_Os01g61390
Os.34655.1.S1_at--173--711Chr01:35828881..35828905 (25 bp)
ATGGACTTTTTGTGCTTTTCAAACA
LOC_Os01g61390
Target Sequence 
CGGCGGTGTCCATCGACATGTGCATCGGCAGCCTGATCGTGTTCCTGTGGAACCGCAACGACAAGCTGGGATCGCAGGTG
TTCGGGCCGGTGCTGGCGTCCGGGCTCATCTGCGGCGACGGCCTCTTCTCCATACCGTACGCGCTGCTCGCGAGGTACGA
CGTCACGCCGCCCATCTGCATCAGGTTCCTCGGCCGGGTGCAGAACGACAAGCTGGACGCTTTCTTGGCGAGTAAGGCTA
AAGCTGGATGATCCTGAATTCTTGATCGAGGAAGAAGTGGGCACAATTGTTTATTCCGTTCTTTTTCTTCCAACACCTGT
AGATTATTTAGTGATAGAACTGATCTTTTCATGTAGAGCGAAATGGACTTTTTGTGCTTTTCAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis