Browse Element(s) Details


Os.34674.1.S1_at

Description gb:AK058723.1
DB_XREF= gi:32968741
TID=Os.34674.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide transporter-like protein (P0455C04.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E11, full insert sequence.
FL= gb:AK070557.1 gb:AK058723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0136011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01312Os.24886.1.S1_at9/111+148625..153251SNF2 domain-containing protein, putative, expressed
LOC_Os01g01320NANA1+154530..157743retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01330NANA1+158167..160909retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g01340Os.38378.1.S1_a_at11/111+165277..167177cytokinin-repressed protein CR9, putative, expressed
LOC_Os01g01350Os.30812.1.S1_at11/111+167600..169969SNF7 family protein, expressed
LOC_Os01g01360Os.34674.1.S1_at11/111+175409..177377POT family protein, expressed
LOC_Os01g01370OsAffx.1860.1.S1_at11/111+182442..183725expressed protein
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34674.1.S1_at--384--571Chr01:176914..176938 (25 bp)
ATCCAGTACTGCCTCATCGGTCTCG
LOC_Os01g01360
Os.34674.1.S1_at--440--9251Chr01:176963..176987 (25 bp)
TCCTCGAGTTCCTCTACCAGGAGGC
LOC_Os01g01360
Os.34674.1.S1_at--977--8331Chr01:177034..177058 (25 bp)
GGCGGCCTTGGCTGCTTCTTAGCCA
LOC_Os01g01360
Os.34674.1.S1_at--36--1911Chr01:177137..177161 (25 bp)
ACGTCGGCAAGTTCGACTACTTCTA
LOC_Os01g01360
Os.34674.1.S1_at--994--9711Chr01:177188..177212 (25 bp)
TCAACCTCATCGTCTTCATCTACTT
LOC_Os01g01360
Os.34674.1.S1_at--358--451Chr01:177205..177229 (25 bp)
ATCTACTTCGCCAAAGCCTACAAGT
LOC_Os01g01360
Os.34674.1.S1_at--532--1711Chr01:177247..177271 (25 bp)
ACCACCCCACATAACTAGTTCATAG
LOC_Os01g01360
Os.34674.1.S1_at--662--10051Chr01:177262..177286 (25 bp)
TAGTTCATAGTATTTCTACACCACT
LOC_Os01g01360
Os.34674.1.S1_at--1157--6871Chr01:177271..177295 (25 bp)
GTATTTCTACACCACTACAGTCTAG
LOC_Os01g01360
Os.34674.1.S1_at--69--6951Chr01:177301..177325 (25 bp)
GTAGTATCTGCTAAGTGACATTATA
LOC_Os01g01360
Os.34674.1.S1_at--969--3151Chr01:177339..177363 (25 bp)
CAAATTAAGGGCATCCAATATCTTC
LOC_Os01g01360
Target Sequence 
ATCCAGTACTGCCTCATCGGTCTCGCCGAGGTCTTCTGCCTCGTCGCCCTCCTCGAGTTCCTCTACCAGGAGGCCCCCGA
CGCCATGCGCAGCCTCGCCTCCGCCTACGCCGCCCTCGCCGGCGGCCTTGGCTGCTTCTTAGCCACCGCCATCAACACCG
CCGTCGACTCCATCACCGGCGACATCGACGCCGGACGCCCCTCCTGGCTCGCGCAGAACATCAACGTCGGCAAGTTCGAC
TACTTCTACTGGCTCCTCGCCGTGCTCAGCACCATCAACCTCATCGTCTTCATCTACTTCGCCAAAGCCTACAAGTACAG
GATCAAGCCCCCCACCACCCCACATAACTAGTTCATAGTATTTCTACACCACTACAGTCTAGTACTAGTAGTATCTGCTA
AGTGACATTATATTGATCAATCAAACAAATTAAGGGCATCCAATATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis