Browse Element(s) Details


Os.34863.1.S1_at

Description gb:AK069831.1
DB_XREF= gi:32979855
TID=Os.34863.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) limonene cyclase-like protein (P0039G05.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027B09, full insert sequence.
FL= gb:AK069831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g453507/11limonene cyclase like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45310NANA1+26047920..26048645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45320OsAffx.23667.1.S1_at11/111+26049703..26051472von Willebrand factor type A domain containing protein
LOC_Os01g45330NANA1+26053934..26061761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45340NANA1+26068882..26069310hypothetical protein
LOC_Os01g45350Os.34863.1.S1_at7/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45350OsAffx.27499.3.S1_x_at1/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45360Os.45985.1.S1_at10/111+26075057..26077312expressed protein
LOC_Os01g45370Os.35811.1.S1_at11/111+26079146..26082617radical SAM enzyme, Cfr family protein, expressed
LOC_Os01g45380Os.30916.1.S1_at11/111+26084643..26089035protein kinase, putative, expressed
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34863.1.S1_at--273--7751Chr01:26074261..26074285 (25 bp)
GGTGTCCCGGCGGATGAGCTACATC
LOC_Os01g45350
Os.34863.1.S1_at--247--2111Chr01:26074290..26074314 (25 bp)
ACATGAAGAACAGCCGCTTCTGCCT
LOC_Os01g45350
Os.34863.1.S1_at--116--9911Chr01:26074364..26074388 (25 bp)
TACTACGAGTGCGTTCCGGTGATCA
LOC_Os01g45350
Os.34863.1.S1_at--400--2211Chr01:26074395..26074419 (25 bp)
ACAACTTCGTGCTGCCGCTGAGCGA
LOC_Os01g45350
Os.34863.1.S1_at--1032--2831Chr01:26074508..26074532 (25 bp)
AAGTACGTGGCCATGCACGGCTGCG
LOC_Os01g45350
Os.34863.1.S1_at--599--8331Chr01:26074539..26074563 (25 bp)
GGCTGCAGAGGCATTTCCTGTGGCA
LOC_Os01g45350
Os.34863.1.S1_at--643--6111Chr01:26074623..26074647 (25 bp)
GAGTGAACCAAATCGAGCTCCACGA
LOC_Os01g45350
Os.34863.1.S1_at--969--1591Chr01:26074638..26074662 (25 bp)
AGCTCCACGAGTAGAGACCGCGTCT
NONE
Os.34863.1.S1_at--993--4211Chr01:26074655..26074679 (25 bp)
CCGCGTCTTGTGTTCGGTCAGAGAA
NONE
Os.34863.1.S1_at--957--2971Chr01:26074679..26074703 (25 bp)
AATGTACGTTCTTGGTTCAGCGCAA
NONE
Os.34863.1.S1_at--104--5731Chr01:26074727..26074751 (25 bp)
GACTGGCCAGAATCTTAAACGATAT
NONE
Target Sequence 
GGTGTCCCGGCGGATGAGCTACATCCAGCACATGAAGAACAGCCGCTTCTGCCTCTGCCCCATGGGGTACGAGGTGAACA
GCCCCCGGATCGTGGAGGCGCTCTACTACGAGTGCGTTCCGGTGATCATCGCCGACAACTTCGTGCTGCCGCTGAGCGAC
GTGCTGGACTGGAGCGCCTTCGCGGTGGTCGTCGCCGAGAAGGACGTACCGGACCTGAAGAAGATACTGCAGGGGATCAC
GCTCCGGAAGTACGTGGCCATGCACGGCTGCGTCAAGCGGCTGCAGAGGCATTTCCTGTGGCACGCGAGGCCCCTCCGGT
ACGACCTCTTCCACATGATCCTGCACTCCATCTGGCTGAGCAGAGTGAACCAAATCGAGCTCCACGAGTAGAGACCGCGT
CTTGTGTTCGGTCAGAGAAATGTACGTTCTTGGTTCAGCGCAAGATTCTCTGTAAGTTTTGGAGAAGACTGGCCAGAATC
TTAAACGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis